TDRD10 (tudor domain containing 10) - Rat Genome Database

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Gene: TDRD10 (tudor domain containing 10) Pan paniscus
Analyze
Symbol: TDRD10
Name: tudor domain containing 10
RGD ID: 11847098
Description: ENCODES a protein that exhibits RNA binding (inferred); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); dyschromatosis symmetrica hereditaria (ortholog); gastrointestinal stromal tumor (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: dapper homolog 3-like; LOC112437008; tudor domain-containing protein 10
RGD Orthologs
Human
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2195,285,901 - 95,331,521 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1195,018,243 - 95,067,222 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01129,857,124 - 129,903,134 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11133,474,583 - 133,515,193 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1133,469,613 - 133,515,193 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function
RNA binding  (IEA)

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
TDRD10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2195,285,901 - 95,331,521 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1195,018,243 - 95,067,222 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01129,857,124 - 129,903,134 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11133,474,583 - 133,515,193 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1133,469,613 - 133,515,193 (+)Ensemblpanpan1.1panPan2
TDRD10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381154,502,219 - 154,548,147 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1154,502,219 - 154,548,147 (+)EnsemblGRCh38hg38GRCh38
GRCh371154,474,695 - 154,520,623 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361152,741,319 - 152,787,247 (+)NCBINCBI36Build 36hg18NCBI36
Celera1127,546,343 - 127,592,255 (+)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1125,838,340 - 125,884,159 (+)NCBIHuRef
CHM1_11155,871,023 - 155,917,026 (+)NCBICHM1_1
T2T-CHM13v2.01153,639,357 - 153,685,274 (+)NCBIT2T-CHM13v2.0
TDRD10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl495,231,252 - 95,284,502 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1495,231,253 - 95,284,485 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24104,057,450 - 104,110,329 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TDRD10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1209,275,380 - 9,323,531 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl209,275,969 - 9,319,327 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660388,614,158 - 8,662,757 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000028406   ⟹   ENSPPAP00000006753
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1133,469,613 - 133,515,193 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000028416   ⟹   ENSPPAP00000006758
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1133,474,345 - 133,514,602 (+)Ensembl
RefSeq Acc Id: XM_034936453   ⟹   XP_034792344
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2195,285,903 - 95,326,953 (-)NCBI
NHGRI_mPanPan1195,018,245 - 95,066,284 (-)NCBI
Mhudiblu_PPA_v01129,861,556 - 129,903,117 (+)NCBI
RefSeq Acc Id: XM_055101165   ⟹   XP_054957140
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2195,285,902 - 95,331,178 (-)NCBI
NHGRI_mPanPan1195,018,244 - 95,067,180 (-)NCBI
RefSeq Acc Id: XM_055101169   ⟹   XP_054957144
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2195,285,901 - 95,331,331 (-)NCBI
NHGRI_mPanPan1195,018,243 - 95,067,222 (-)NCBI
RefSeq Acc Id: XM_055101172   ⟹   XP_054957147
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2195,285,902 - 95,331,521 (-)NCBI
NHGRI_mPanPan1195,018,244 - 95,066,814 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034792344 (Get FASTA)   NCBI Sequence Viewer  
  XP_054957140 (Get FASTA)   NCBI Sequence Viewer  
  XP_054957144 (Get FASTA)   NCBI Sequence Viewer  
  XP_054957147 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000006753.1
  ENSPPAP00000006758.1
Reference Protein Sequences
RefSeq Acc Id: XP_034792344   ⟸   XM_034936453
- Peptide Label: isoform X3
RefSeq Acc Id: ENSPPAP00000006758   ⟸   ENSPPAT00000028416
RefSeq Acc Id: ENSPPAP00000006753   ⟸   ENSPPAT00000028406
RefSeq Acc Id: XP_054957144   ⟸   XM_055101169
- Peptide Label: isoform X2
- UniProtKB: A0A2R8ZSA5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054957140   ⟸   XM_055101165
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZSB0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054957147   ⟸   XM_055101172
- Peptide Label: isoform X4
Protein Domains
RRM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000025622 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000028406.1 UniProtKB/TrEMBL
  ENSPPAT00000028416.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.140 UniProtKB/TrEMBL
  3.30.70.330 UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
  RRM_TDRD10 UniProtKB/TrEMBL
  Tudor UniProtKB/TrEMBL
NCBI Gene TDRD10 ENTREZGENE
Pfam RRM_1 UniProtKB/TrEMBL
  TUDOR UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
  Tudor/PWWP/MBT UniProtKB/TrEMBL
UniProt A0A2R8ZSA5 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZSB0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-11 TDRD10  tudor domain containing 10  LOC112437008  dapper homolog 3-like  Data merged from RGD:13573062 737654 PROVISIONAL