CLEC4F (C-type lectin domain family 4 member F) - Rat Genome Database

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Gene: CLEC4F (C-type lectin domain family 4 member F) Pan paniscus
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Symbol: CLEC4F
Name: C-type lectin domain family 4 member F
RGD ID: 11838407
Description: ENCODES a protein that exhibits galactose binding (ortholog); glycolipid binding (ortholog); INVOLVED IN NK T cell activation (ortholog); positive regulation of gene expression (ortholog); ASSOCIATED WITH dystonia (ortholog); Experimental Liver Cirrhosis (ortholog); Methylmalonyl-CoA Epimerase Deficiency (ortholog); FOUND IN plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21255,568,918 - 55,580,564 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A55,572,862 - 55,584,508 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A70,872,242 - 70,883,547 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A71,985,988 - 71,997,123 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A71,985,814 - 71,997,123 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
CLEC4F
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21255,568,918 - 55,580,564 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A55,572,862 - 55,584,508 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A70,872,242 - 70,883,547 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A71,985,988 - 71,997,123 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A71,985,814 - 71,997,123 (-)Ensemblpanpan1.1panPan2
CLEC4F
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38270,808,643 - 70,825,235 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl270,808,643 - 70,820,599 (-)EnsemblGRCh38hg38GRCh38
GRCh37271,035,775 - 71,047,731 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36270,889,283 - 70,901,240 (-)NCBINCBI36Build 36hg18NCBI36
Build 34270,947,432 - 70,959,387NCBI
Celera270,886,456 - 70,898,414 (-)NCBICelera
Cytogenetic Map2p13.3NCBI
HuRef270,772,576 - 70,784,093 (-)NCBIHuRef
CHM1_1270,965,099 - 70,977,053 (-)NCBICHM1_1
T2T-CHM13v2.0270,819,694 - 70,836,320 (-)NCBIT2T-CHM13v2.0
Clec4f
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39683,621,524 - 83,633,098 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl683,621,524 - 83,633,169 (-)EnsemblGRCm39 Ensembl
GRCm38683,644,542 - 83,656,116 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl683,644,542 - 83,656,187 (-)EnsemblGRCm38mm10GRCm38
MGSCv37683,594,536 - 83,606,110 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36683,610,200 - 83,621,774 (-)NCBIMGSCv36mm8
Celera685,626,646 - 85,638,216 (-)NCBICelera
Cytogenetic Map6C3NCBI
cM Map635.94NCBI
Clec4f
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84117,686,686 - 117,696,407 (-)NCBIGRCr8
mRatBN7.24116,129,023 - 116,138,744 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4116,129,023 - 116,138,775 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4121,607,811 - 121,617,529 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04117,382,983 - 117,392,701 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04115,996,525 - 116,006,244 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04115,322,300 - 115,332,021 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4115,322,291 - 115,332,052 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04179,911,569 - 179,921,290 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44117,839,863 - 117,849,584 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14118,084,343 - 118,094,065 (-)NCBI
Celera4105,121,362 - 105,131,083 (-)NCBICelera
Cytogenetic Map4q34NCBI
Clec4f
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542414,367,192 - 14,381,350 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542414,365,348 - 14,379,664 (+)NCBIChiLan1.0ChiLan1.0
CLEC4F
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11069,170,393 - 69,179,578 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1069,170,437 - 69,179,914 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1069,057,978 - 69,067,000 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01070,192,860 - 70,202,052 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1070,192,908 - 70,202,376 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11069,911,411 - 69,920,436 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01070,172,783 - 70,181,815 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01070,472,208 - 70,481,400 (-)NCBIUU_Cfam_GSD_1.0
Clec4f
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629213,553,601 - 13,565,458 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493649115,005,474 - 15,018,031 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLEC4F
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl371,677,918 - 71,696,346 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1371,683,898 - 71,696,357 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CLEC4F
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11436,293,963 - 36,304,590 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604575,716,850 - 75,727,779 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Clec4f
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247622,567,794 - 2,584,493 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247622,567,854 - 2,584,329 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000033518   ⟹   ENSPPAP00000010864
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2A71,985,814 - 71,997,123 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000033519   ⟹   ENSPPAP00000010865
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2A71,985,911 - 71,997,123 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000033520   ⟹   ENSPPAP00000010866
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2A71,985,988 - 71,997,123 (-)Ensembl
RefSeq Acc Id: XM_055107371   ⟹   XP_054963346
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21255,568,918 - 55,580,564 (+)NCBI
NHGRI_mPanPan12A55,572,862 - 55,584,508 (+)NCBI
Protein Sequences
Protein RefSeqs XP_054963346 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000010864.1
  ENSPPAP00000010865.1
  ENSPPAP00000010866.1
Ensembl Acc Id: ENSPPAP00000010866   ⟸   ENSPPAT00000033520
Ensembl Acc Id: ENSPPAP00000010865   ⟸   ENSPPAT00000033519
Ensembl Acc Id: ENSPPAP00000010864   ⟸   ENSPPAT00000033518
RefSeq Acc Id: XP_054963346   ⟸   XM_055107371
- UniProtKB: A0A2R9A543 (UniProtKB/TrEMBL)
Protein Domains
C-type lectin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000028639 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000033518.1 UniProtKB/TrEMBL
  ENSPPAT00000033519.1 UniProtKB/TrEMBL
  ENSPPAT00000033520.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.170 UniProtKB/TrEMBL
  3.10.100.10 UniProtKB/TrEMBL
InterPro C-type_lectin-like UniProtKB/TrEMBL
  C-type_lectin-like/link_sf UniProtKB/TrEMBL
  C-type_lectin/matrix_domain UniProtKB/TrEMBL
  CD209-like_CTLD UniProtKB/TrEMBL
  CTDL_fold UniProtKB/TrEMBL
NCBI Gene CLEC4F ENTREZGENE
PANTHER C-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 180 UniProtKB/TrEMBL
  EARLY ACTIVATION ANTIGEN CD69 UniProtKB/TrEMBL
Pfam Lectin_C UniProtKB/TrEMBL
PROSITE C_TYPE_LECTIN_2 UniProtKB/TrEMBL
SMART CLECT UniProtKB/TrEMBL
Superfamily-SCOP SSF56436 UniProtKB/TrEMBL
UniProt A0A2R9A201_PANPA UniProtKB/TrEMBL
  A0A2R9A543 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9A6A6_PANPA UniProtKB/TrEMBL