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Gene: TADA1 (transcriptional adaptor 1) Pan paniscus

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Symbol:

TADA1

Name:

transcriptional adaptor 1

RGD ID:

11835865

Description:

ENCODES a protein that exhibits transcription coactivator activity (inferred); INVOLVED IN positive regulation of DNA-templated transcription (inferred); regulation of transcription by RNA polymerase II (inferred); PARTICIPATES IN RNA polymerase II transcription initiation pathway; ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN cytosol (inferred); focal adhesion (inferred); nucleoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

transcriptional adapter 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	82,900,078 - 82,923,045 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	82,568,483 - 82,591,613 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	142,273,856 - 142,296,775 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	146,061,149 - 146,083,348 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	146,061,155 - 146,083,348 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

gastrointestinal stromal tumor (ISO)

parathyroid carcinoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of DNA-templated transcription (IEA)

regulation of transcription by RNA polymerase II (IEA)

Cellular Component

cytosol (IEA)

focal adhesion (IEA)

nucleoplasm (IEA)

nucleus (IEA)

SAGA complex (IEA)

SAGA-type complex (IEA)

Molecular Function

protein binding (ISO)

transcription coactivator activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

RNA polymerase II transcription initiation pathway (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

TADA1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	82,900,078 - 82,923,045 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	82,568,483 - 82,591,613 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	142,273,856 - 142,296,775 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	146,061,149 - 146,083,348 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	146,061,155 - 146,083,348 (-)	Ensembl	panpan1.1		panPan2

TADA1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	166,856,510 - 166,876,264 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	166,856,510 - 166,876,264 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	166,825,747 - 166,845,501 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	165,092,371 - 165,112,103 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	139,930,880 - 139,950,792 (-)	NCBI		Celera
Cytogenetic Map	1	q24.1	NCBI
HuRef	1	138,072,799 - 138,092,712 (-)	NCBI		HuRef
CHM1_1	1	168,247,461 - 168,267,374 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	166,202,343 - 166,222,098 (-)	NCBI		T2T-CHM13v2.0

Tada1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	166,206,736 - 166,221,190 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	166,206,666 - 166,221,190 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	166,379,167 - 166,393,621 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	166,379,097 - 166,393,621 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	168,309,298 - 168,323,752 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	168,215,975 - 168,230,296 (+)	NCBI		MGSCv36	mm8
Celera	1	168,820,280 - 168,834,727 (+)	NCBI		Celera
Cytogenetic Map	1	H2.3	NCBI
cM Map	1	73.74	NCBI

Tada1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	81,165,871 - 81,180,421 (+)	NCBI		GRCr8
mRatBN7.2	13	78,632,908 - 78,646,863 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	78,632,866 - 78,647,504 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	81,251,220 - 81,265,181 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	82,564,771 - 82,578,733 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	79,803,557 - 79,817,523 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	84,588,587 - 84,602,542 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	84,588,351 - 84,603,134 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	89,462,838 - 89,476,793 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	82,111,105 - 82,125,060 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	82,027,639 - 82,139,843 (+)	NCBI
Celera	13	78,341,464 - 78,355,419 (+)	NCBI		Celera
Cytogenetic Map	13	q23	NCBI

Tada1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955462	10,057,559 - 10,073,865 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955462	10,057,468 - 10,073,871 (+)	NCBI	ChiLan1.0	ChiLan1.0

TADA1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	31,513,289 - 31,529,891 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	31,513,496 - 31,528,843 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	31,051,937 - 31,068,532 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	31,335,115 - 31,351,744 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	31,335,104 - 31,351,740 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	31,172,869 - 31,189,461 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	31,205,097 - 31,221,708 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	31,443,614 - 31,460,232 (+)	NCBI		UU_Cfam_GSD_1.0

Tada1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	101,184,357 - 101,198,008 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936481	19,031,207 - 19,046,062 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936481	19,031,207 - 19,046,057 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TADA1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	84,174,476 - 84,187,514 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	84,174,481 - 84,190,077 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	91,888,031 - 91,900,992 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TADA1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	62,155,931 - 62,176,022 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	62,155,982 - 62,177,657 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	63,892,640 - 63,912,787 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tada1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624826	4,920,372 - 4,941,368 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624826	4,920,364 - 4,940,982 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003824590	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000059918 ⟹ ENSPPAP00000037022

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	1	146,061,155 - 146,083,348 (-)	Ensembl

RefSeq Acc Id:

XM_003824590 ⟹ XP_003824638

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	82,900,078 - 82,923,045 (+)	NCBI
NHGRI_mPanPan1	1	82,568,483 - 82,591,613 (+)	NCBI
Mhudiblu_PPA_v0	1	142,273,856 - 142,296,775 (-)	NCBI
PanPan1.1	1	146,061,149 - 146,083,348 (-)	NCBI

Sequence:

show sequence

CTCGAGGGGCGGGAGGAAGAGAGCAGAGTTTGGCCGGGCACCTTCCCTGCAAAAAGGCGGGCGG
AGCCGAAAACCAAACAAACGACTTCTGAGAGACTGGGGGCGGGACTGACGGCGGCCGGCTTAGC
TTCCAGAGCCAAGGCCTTCCGCCGAGTTGGTTTTTGGGTTGTTGGTCGCGGTGGCCGGGCGGTC
TGCGGTCGGGCTGAGACACGCGGAGCAATGGCGACCTTTGTGAGCGAGCTGGAGGCGGCCAAGA
AGAACTTGAGCGAGGCCCTGGGGGACAACGTGAAACAATACTGGGCTAACCTAAAGCTGTGGTT
CAAGCAGAAGATCAGCAAAGAGGAGTTTGACCTTGAAGCTCATAGACTTCTCACACAGGATAAT
GTCCATTCTCACAATGATTTCCTCCTGGCCATTCTCACGCGTTGTCAGATTTTGGTTTCTACAC
CAGATGGTGCTGGATCTTTGCCCTGGCCAGGGGGTTCCGCAGCAAAACCTGGAAAACCCAAGGG
AAAGAAAAAGCTTTCTTCTGTTCGTCAGAAATTTGATCATAGATTCCAGCCTCAAAATCCTCTC
TCAGGAGCCCAGCAATTTGTGGCAAAGGATCCCCAAGATGATGACGACTTGAAACTTTGTTCCC
ACACAATGATGCTTCCCACTCGAGGCCAGCTTGAAGGGAGAATGATAGTGACTGCTTATGAGCA
TGGGCTGGACAATGTCACCGAGGAGGCTGTTTCAGCTGTTGTCTATGCTGTGGAGAATCACCTT
AAAGATATACTGACGTCAGTTGTGTCAAGAAGGAAAGCTTATCGGTTACGAGATGGTCATTTTA
AATATGCCTTTGGCAGTAACGTGACCCCGCAGCCATACCTGAAGAATAGTGTAGTAGCTTACAA
CAACTTAATAGAAAGCCCTCCAGCTTTTACTGCTCCCTGTGCTGGTCAGAATCCAGCTTCTCAC
CCACCCCCTGATGATGCTGAGCAGCAGGCTGCACTCCTGCTGGCATGCTCCGGAGACACTCTAC
CTGCATCTTTGCCTCCGGTGAACATGTACGATCTCTTTGAAGCTTTGCAGGTGCACAGGGAAGT
CATCCCTACACATACTGTCTATGCTCTTAACATTGAAAGGATCATCACGAAACTCTGGCATCCA
AATCATGAAGAGCTGCAGCAAGACAAAGTTCACCGCCAGCGCTTGGCAGCCAAGGAGGGGCTTT
TGCTGTGCTAAATTAGGATTTGAGGGTGTGGGACCCTCACCAAATTCATTGATTACTGAAAATT
GAATGTTTTTTGGGTCCACATTTCAAGGCTGAAGTGTATAGTGTATATATAACCTTTCCTATGG
AAATGTGACATTGAGTACATTTTGTGTTGCTATTGTGAAGCCATTAATATAAATCTTTGGTAAT
GACCCATATCTCTATGTGTTCCCAGTTGTGGGAGCAGGCACTAATGAAATCCTGTGCCTGGAAT
GGAGATATTTAGGTACCTGAGGCTTAGTGTCCTGTGGTCTGCATGTAAGATAGATGACATCCTA
GAACAAAGAAGCTGTTTTAACTTAATCCCCCTGATCAGCAGGATATCTGTGTGTTCAGTGACAT
CATACATTCTGTATCTAGAAGTCTAAAATTTCTGCCTTTCTCCTAAAGAATGTGTTCTTGCATT
TTGGTTGAAATAACCTACACAGTGTTAAAAATCAGATACCTCCTTTAGTGACCAGTTCAAATTT
TAATAGCGATAGGTAGCCCCTGAGAAATTCATCACTATAACTCCACAGGAAATACGACTTGGAA
GTGCTCTGTGTACTAGACAAAATAAAGCCCCTCTTTGCATTTAAAACCAAAGTCAAAACAAAAC
TCTTGTAATGCAATTAATTAACTTTATGTCTTCCCATGACTCAAGTTTTGTTAAATATGCCCAA
AAACTTTGATTGGCAGTTTCTTCAGTTAATTATTCCTATAGAATGTATTTTAAGAAATCTATAC
AAATTGGATATATGCTTGGTAATTCCCCAGTTTCTAGGAGGTACCTATTTCTACCGTTTCAAGT
GATGAAGTGAAAATAATTTACATTCGATAGTGTTACTGATAACAAACCTACTTTTCTTAAGAGA
TATGTTGCTTTTTACTTAAGGGATAGTGTTGATAGATAAATTAGAATGTATAGATAGGTTTGTG
AAAGTCTAAATAATGGCTGTATAGATATGTATATATGGTTCACATATCTGGATCTGTGTATTTG
ATTTTGTACTTTAAATGTGACAAATAAACCTTTTGGGAGAAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_003824638	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000037022
	ENSPPAP00000037022.1

RefSeq Acc Id:

XP_003824638 ⟸ XM_003824590

- UniProtKB:

A0A2R9CFK1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MATFVSELEAAKKNLSEALGDNVKQYWANLKLWFKQKISKEEFDLEAHRLLTQDNVHSHNDFLL
AILTRCQILVSTPDGAGSLPWPGGSAAKPGKPKGKKKLSSVRQKFDHRFQPQNPLSGAQQFVAK
DPQDDDDLKLCSHTMMLPTRGQLEGRMIVTAYEHGLDNVTEEAVSAVVYAVENHLKDILTSVVS
RRKAYRLRDGHFKYAFGSNVTPQPYLKNSVVAYNNLIESPPAFTAPCAGQNPASHPPPDDAEQQ
AALLLACSGDTLPASLPPVNMYDLFEALQVHREVIPTHTVYALNIERIITKLWHPNHEELQQDK
VHRQRLAAKEGLLLC

hide sequence

Ensembl Acc Id:

ENSPPAP00000037022 ⟸ ENSPPAT00000059918

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000041262	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000059918.1	UniProtKB/TrEMBL
InterPro	Hfi1/Tada1	UniProtKB/TrEMBL
KEGG Report	pps:100969331	UniProtKB/TrEMBL
NCBI Gene	TADA1	ENTREZGENE
PANTHER	PTHR21277	UniProtKB/TrEMBL
	TRANSCRIPTIONAL ADAPTER 1	UniProtKB/TrEMBL
Pfam	SAGA-Tad1	UniProtKB/TrEMBL
UniProt	A0A2R9CFK1	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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