PCDHB8 (protocadherin beta 8) - Rat Genome Database

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Gene: PCDHB8 (protocadherin beta 8) Pan paniscus
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Symbol: PCDHB8
Name: protocadherin beta 8
RGD ID: 11832962
Description: ENCODES a protein that exhibits calcium ion binding (inferred); INVOLVED IN cell adhesion (inferred); homophilic cell adhesion via plasma membrane adhesion molecules (inferred); nervous system development (inferred); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 31 (ortholog); familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN photoreceptor connecting cilium (ortholog); photoreceptor disc membrane (ortholog); postsynaptic membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protocadherin beta-8
RGD Orthologs
Human
Mouse
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24136,432,071 - 136,438,597 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15134,573,675 - 134,576,453 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05136,538,882 - 136,543,805 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15142,654,750 - 142,657,961 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5142,654,990 - 142,657,395 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PCDHB8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24136,432,071 - 136,438,597 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15134,573,675 - 134,576,453 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05136,538,882 - 136,543,805 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15142,654,750 - 142,657,961 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5142,654,990 - 142,657,395 (+)Ensemblpanpan1.1panPan2
PCDHB8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385141,177,790 - 141,180,539 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5141,177,790 - 141,182,369 (+)EnsemblGRCh38hg38GRCh38
GRCh375140,557,371 - 140,560,120 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365140,537,614 - 140,540,205 (+)NCBINCBI36Build 36hg18NCBI36
Build 345140,537,613 - 140,540,205NCBI
Celera5136,634,257 - 136,636,848 (+)NCBICelera
Cytogenetic Map5q31.3NCBI
HuRef5135,702,415 - 135,705,125 (+)NCBIHuRef
CHM1_15139,990,562 - 139,993,272 (+)NCBICHM1_1
T2T-CHM13v2.05141,703,111 - 141,705,860 (+)NCBIT2T-CHM13v2.0
Pcdhb16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391837,610,821 - 37,616,091 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1837,610,867 - 37,616,091 (+)EnsemblGRCm39 Ensembl
GRCm381837,477,768 - 37,483,038 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1837,477,814 - 37,483,038 (+)EnsemblGRCm38mm10GRCm38
MGSCv371837,637,422 - 37,642,692 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361837,603,814 - 37,608,758 (+)NCBIMGSCv36mm8
Celera1838,829,063 - 38,834,342 (+)NCBICelera
Cytogenetic Map18B3NCBI
cM Map1819.5NCBI
PCDHB8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12343,812,288 - 43,815,257 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603434,047,993 - 34,052,398 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008954536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000009872   ⟹   ENSPPAP00000002008
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl5142,654,990 - 142,657,395 (+)Ensembl
RefSeq Acc Id: XM_008954536   ⟹   XP_008952784
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24136,432,071 - 136,438,597 (+)NCBI
NHGRI_mPanPan15134,573,675 - 134,576,453 (+)NCBI
Mhudiblu_PPA_v05136,538,882 - 136,543,805 (+)NCBI
PanPan1.15142,654,750 - 142,657,961 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008952784 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000002008
  ENSPPAP00000002008.1
RefSeq Acc Id: XP_008952784   ⟸   XM_008954536
- UniProtKB: A0A2R8ZEH8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000002008   ⟸   ENSPPAT00000009872
Protein Domains
Cadherin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000009139 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000009872.1 UniProtKB/TrEMBL
Gene3D-CATH Cadherins UniProtKB/TrEMBL
InterPro Cadherin-like_dom UniProtKB/TrEMBL
  Cadherin-like_sf UniProtKB/TrEMBL
  Cadherin_C UniProtKB/TrEMBL
  Cadherin_CS UniProtKB/TrEMBL
  Cadherin_N UniProtKB/TrEMBL
  Protocadherin/Cadherin-CA UniProtKB/TrEMBL
KEGG Report pps:103783389 UniProtKB/TrEMBL
NCBI Gene PCDHB8 ENTREZGENE
PANTHER CADHERIN-87A UniProtKB/TrEMBL
  PROTOCADHERIN BETA-8 UniProtKB/TrEMBL
Pfam Cadherin UniProtKB/TrEMBL
  Cadherin_2 UniProtKB/TrEMBL
  Cadherin_C_2 UniProtKB/TrEMBL
PRINTS CADHERIN UniProtKB/TrEMBL
PROSITE CADHERIN_1 UniProtKB/TrEMBL
  CADHERIN_2 UniProtKB/TrEMBL
SMART SM00112 UniProtKB/TrEMBL
Superfamily-SCOP SSF49313 UniProtKB/TrEMBL
UniProt A0A2R8ZEH8 ENTREZGENE, UniProtKB/TrEMBL