ABLIM3 (actin binding LIM protein family member 3) - Rat Genome Database

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Gene: ABLIM3 (actin binding LIM protein family member 3) Pan paniscus
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Symbol: ABLIM3
Name: actin binding LIM protein family member 3
RGD ID: 11829624
Description: ENCODES a protein that exhibits actin binding (inferred); actin filament binding (inferred); metal ion binding (inferred); INVOLVED IN cilium assembly (ortholog); lamellipodium assembly (ortholog); positive regulation of protein targeting to mitochondrion (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN glutamatergic synapse (ortholog); synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: actin-binding LIM protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24144,372,654 - 144,491,221 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15142,512,200 - 142,630,770 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05144,568,394 - 144,686,983 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15150,576,568 - 150,697,271 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5150,576,604 - 150,697,271 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ABLIM3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24144,372,654 - 144,491,221 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15142,512,200 - 142,630,770 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05144,568,394 - 144,686,983 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15150,576,568 - 150,697,271 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5150,576,604 - 150,697,271 (+)Ensemblpanpan1.1panPan2
ABLIM3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385149,141,493 - 149,260,542 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5149,141,483 - 149,260,542 (+)EnsemblGRCh38hg38GRCh38
GRCh375148,521,056 - 148,640,105 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365148,501,247 - 148,620,192 (+)NCBINCBI36Build 36hg18NCBI36
Build 345148,501,325 - 148,620,192NCBI
Celera5144,603,161 - 144,721,993 (+)NCBICelera
Cytogenetic Map5q32NCBI
HuRef5143,667,657 - 143,786,427 (+)NCBIHuRef
CHM1_15147,953,549 - 148,072,434 (+)NCBICHM1_1
T2T-CHM13v2.05149,676,400 - 149,795,360 (+)NCBIT2T-CHM13v2.0
Ablim3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391861,932,463 - 62,044,956 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1861,932,463 - 62,044,895 (-)EnsemblGRCm39 Ensembl
GRCm381861,799,392 - 61,911,885 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1861,799,392 - 61,911,824 (-)EnsemblGRCm38mm10GRCm38
MGSCv371861,959,046 - 62,071,506 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361861,924,763 - 62,037,167 (-)NCBIMGSCv36mm8
Celera1863,085,016 - 63,197,614 (-)NCBICelera
Cytogenetic Map18E1NCBI
cM Map1834.77NCBI
Ablim3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81857,527,917 - 57,646,936 (-)NCBIGRCr8
mRatBN7.21855,256,135 - 55,376,629 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1855,257,583 - 55,376,380 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1857,351,192 - 57,468,656 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01858,065,768 - 58,183,586 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01855,881,446 - 56,000,234 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01857,126,534 - 57,245,965 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1857,128,399 - 57,245,666 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01856,354,869 - 56,474,025 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41857,781,588 - 57,900,968 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1853,406,643 - 53,525,162 (-)NCBICelera
Cytogenetic Map18q12.1NCBI
Ablim3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554155,153,410 - 5,261,042 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554155,151,445 - 5,261,300 (-)NCBIChiLan1.0ChiLan1.0
ABLIM3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1459,688,779 - 59,798,456 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl459,690,735 - 59,798,383 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha459,453,388 - 59,563,033 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0460,171,352 - 60,281,191 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl460,171,361 - 60,281,200 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1459,957,915 - 60,067,722 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0460,072,443 - 60,182,136 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0460,602,832 - 60,712,537 (-)NCBIUU_Cfam_GSD_1.0
Ablim3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213144,024,213 - 144,135,492 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365045,600,253 - 5,708,857 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365045,598,186 - 5,709,505 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABLIM3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2150,260,196 - 150,423,212 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12150,260,185 - 150,423,214 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22157,141,854 - 157,186,531 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ABLIM3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12351,763,179 - 51,882,083 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2351,763,226 - 51,882,383 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603425,865,160 - 25,984,782 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ablim3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247748,510,907 - 8,629,090 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247748,510,132 - 8,631,034 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000035526   ⟹   ENSPPAP00000012859
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl5150,576,604 - 150,697,271 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000035532   ⟹   ENSPPAP00000012865
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl5150,576,604 - 150,697,271 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000035553   ⟹   ENSPPAP00000012886
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl5150,617,899 - 150,695,236 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000035559   ⟹   ENSPPAP00000012892
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl5150,618,276 - 150,695,236 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000035565   ⟹   ENSPPAP00000012898
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl5150,618,276 - 150,635,130 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000035577   ⟹   ENSPPAP00000012910
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl5150,618,345 - 150,696,407 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000035579   ⟹   ENSPPAP00000012912
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl5150,618,345 - 150,695,236 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000035583   ⟹   ENSPPAP00000012916
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl5150,684,265 - 150,695,236 (+)Ensembl
RefSeq Acc Id: XM_003829046   ⟹   XP_003829094
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24144,372,654 - 144,491,221 (+)NCBI
NHGRI_mPanPan15142,512,200 - 142,630,770 (+)NCBI
Mhudiblu_PPA_v05144,568,428 - 144,686,983 (+)NCBI
PanPan1.15150,576,568 - 150,697,271 (+)NCBI
Sequence:
RefSeq Acc Id: XR_008625449
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24144,372,654 - 144,491,221 (+)NCBI
NHGRI_mPanPan15142,512,200 - 142,628,788 (+)NCBI
RefSeq Acc Id: XR_008625450
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24144,372,654 - 144,491,221 (+)NCBI
NHGRI_mPanPan15142,512,201 - 142,628,788 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003829094 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000012859.1
  ENSPPAP00000012865.1
  ENSPPAP00000012886.1
  ENSPPAP00000012892.1
  ENSPPAP00000012898.1
  ENSPPAP00000012910.1
  ENSPPAP00000012912.1
  ENSPPAP00000012916.1
RefSeq Acc Id: XP_003829094   ⟸   XM_003829046
- UniProtKB: A0A2R9A6D6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000012859   ⟸   ENSPPAT00000035526
Ensembl Acc Id: ENSPPAP00000012898   ⟸   ENSPPAT00000035565
Ensembl Acc Id: ENSPPAP00000012892   ⟸   ENSPPAT00000035559
Ensembl Acc Id: ENSPPAP00000012886   ⟸   ENSPPAT00000035553
Ensembl Acc Id: ENSPPAP00000012865   ⟸   ENSPPAT00000035532
Ensembl Acc Id: ENSPPAP00000012916   ⟸   ENSPPAT00000035583
Ensembl Acc Id: ENSPPAP00000012912   ⟸   ENSPPAT00000035579
Ensembl Acc Id: ENSPPAP00000012910   ⟸   ENSPPAT00000035577
Protein Domains
HP   LIM zinc-binding


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000029456 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000035526.1 UniProtKB/TrEMBL
  ENSPPAT00000035532.1 UniProtKB/TrEMBL
  ENSPPAT00000035553.1 UniProtKB/TrEMBL
  ENSPPAT00000035559.1 UniProtKB/TrEMBL
  ENSPPAT00000035565.1 UniProtKB/TrEMBL
  ENSPPAT00000035577.1 UniProtKB/TrEMBL
  ENSPPAT00000035579.1 UniProtKB/TrEMBL
  ENSPPAT00000035583.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.950.10 UniProtKB/TrEMBL
  Cysteine Rich Protein UniProtKB/TrEMBL
InterPro AbLIM_anchor UniProtKB/TrEMBL
  Actin-binding_LIM UniProtKB/TrEMBL
  Villin_headpiece UniProtKB/TrEMBL
  Villin_headpiece_dom_sf UniProtKB/TrEMBL
  Znf_LIM UniProtKB/TrEMBL
NCBI Gene ABLIM3 ENTREZGENE
PANTHER ACTIN-BINDING LIM PROTEIN UniProtKB/TrEMBL
  PTHR24213:SF0 UniProtKB/TrEMBL
Pfam AbLIM_anchor UniProtKB/TrEMBL
  LIM UniProtKB/TrEMBL
  VHP UniProtKB/TrEMBL
PROSITE LIM_DOMAIN_1 UniProtKB/TrEMBL
  LIM_DOMAIN_2 UniProtKB/TrEMBL
  PS51089 UniProtKB/TrEMBL
SMART LIM UniProtKB/TrEMBL
  VHP UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/TrEMBL
  SSF47050 UniProtKB/TrEMBL
UniProt A0A2R9A6D6 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9A6I6_PANPA UniProtKB/TrEMBL
  A0A2R9A7J5_PANPA UniProtKB/TrEMBL
  A0A2R9A7P7_PANPA UniProtKB/TrEMBL
  A0A2R9AB74_PANPA UniProtKB/TrEMBL
  A0A2R9ABA1_PANPA UniProtKB/TrEMBL
  A0A2R9ABR3_PANPA UniProtKB/TrEMBL
  A0A2R9ABT6_PANPA UniProtKB/TrEMBL