SLITRK1 (SLIT and NTRK like family member 1) - Rat Genome Database

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Gene: SLITRK1 (SLIT and NTRK like family member 1) Pan paniscus
Analyze
Symbol: SLITRK1
Name: SLIT and NTRK like family member 1
RGD ID: 11826893
Description: INVOLVED IN adult behavior (ortholog); axonogenesis (ortholog); endocytosis (ortholog); ASSOCIATED WITH chromosome 13q14 deletion syndrome (ortholog); Gilles de la Tourette syndrome (ortholog); trichotillomania (ortholog); FOUND IN GABA-ergic synapse (ortholog); glutamatergic synapse (ortholog); postsynaptic density membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SLIT and NTRK-like protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21485,431,417 - 85,436,813 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11384,029,703 - 84,034,980 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01365,081,844 - 65,087,135 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11384,251,713 - 84,256,899 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1384,253,287 - 84,256,069 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLITRK1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21485,431,417 - 85,436,813 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11384,029,703 - 84,034,980 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01365,081,844 - 65,087,135 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11384,251,713 - 84,256,899 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1384,253,287 - 84,256,069 (-)Ensemblpanpan1.1panPan2
SLITRK1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381383,877,205 - 83,882,474 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1383,877,205 - 83,882,474 (-)EnsemblGRCh38hg38GRCh38
GRCh371384,451,340 - 84,456,609 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361383,349,344 - 83,354,529 (-)NCBINCBI36Build 36hg18NCBI36
Build 341383,349,344 - 83,354,529NCBI
Celera1365,348,921 - 65,354,105 (-)NCBICelera
Cytogenetic Map13q31.1NCBI
HuRef1365,151,246 - 65,156,419 (-)NCBIHuRef
CHM1_11384,418,864 - 84,424,052 (-)NCBICHM1_1
T2T-CHM13v2.01383,110,000 - 83,115,269 (-)NCBIT2T-CHM13v2.0
Slitrk1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914109,147,420 - 109,151,671 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl14109,146,232 - 109,151,590 (-)EnsemblGRCm39 Ensembl
GRCm3814108,909,988 - 108,914,239 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14108,908,800 - 108,914,158 (-)EnsemblGRCm38mm10GRCm38
MGSCv3714109,309,205 - 109,313,456 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3614107,794,000 - 107,796,090 (-)NCBIMGSCv36mm8
Celera14107,460,480 - 107,464,780 (-)NCBICelera
Cytogenetic Map14E3NCBI
cM Map1456.78NCBI
Slitrk1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81592,137,703 - 92,141,741 (-)NCBIGRCr8
mRatBN7.21585,723,252 - 85,727,290 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1585,724,475 - 85,727,509 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1589,666,140 - 89,670,177 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01590,783,409 - 90,787,447 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01587,714,550 - 87,718,588 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01593,303,382 - 93,307,420 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1593,303,382 - 93,307,420 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01596,793,133 - 96,797,171 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41593,205,850 - 93,209,888 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11593,220,490 - 93,225,771 (-)NCBI
Celera1584,748,071 - 84,752,109 (-)NCBICelera
Cytogenetic Map15q23NCBI
Slitrk1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540424,437,299 - 24,439,389 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540424,436,394 - 24,439,749 (+)NCBIChiLan1.0ChiLan1.0
SLITRK1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12236,325,548 - 36,329,784 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2236,326,751 - 36,328,841 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2236,153,354 - 36,157,576 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02236,686,513 - 36,690,728 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2236,685,446 - 36,690,833 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12236,332,182 - 36,336,404 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02236,441,629 - 36,445,848 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02236,443,335 - 36,447,558 (-)NCBIUU_Cfam_GSD_1.0
Slitrk1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945123,124,522 - 123,128,770 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366961,449,687 - 1,451,777 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366961,447,644 - 1,452,612 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLITRK1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1154,950,676 - 54,955,949 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11154,950,669 - 54,955,768 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21160,164,538 - 60,169,641 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLITRK1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1362,912,035 - 62,917,774 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl362,914,244 - 62,916,331 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604619,250,084 - 19,255,988 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slitrk1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475116,636,183 - 16,638,273 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475116,635,950 - 16,638,771 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003832014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000051976   ⟹   ENSPPAP00000029128
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1384,253,287 - 84,256,069 (-)Ensembl
RefSeq Acc Id: XM_003832014   ⟹   XP_003832062
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21485,431,417 - 85,436,813 (-)NCBI
NHGRI_mPanPan11384,029,703 - 84,034,980 (-)NCBI
Mhudiblu_PPA_v01365,081,844 - 65,087,135 (-)NCBI
PanPan1.11384,251,713 - 84,256,899 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003832062 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000029128.1
RefSeq Acc Id: XP_003832062   ⟸   XM_003832014
- UniProtKB: A0A2R9BIH7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000029128   ⟸   ENSPPAT00000051976
Protein Domains
LRRCT


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000037587 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000051976.1 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro Cys-rich_flank_reg_C UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
NCBI Gene SLITRK1 ENTREZGENE
PANTHER PTHR45773 UniProtKB/TrEMBL
  SLIT AND NTRK-LIKE PROTEIN 1 UniProtKB/TrEMBL
Pfam LRR_8 UniProtKB/TrEMBL
PROSITE LRR UniProtKB/TrEMBL
SMART LRR_TYP UniProtKB/TrEMBL
  LRRCT UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
UniProt A0A2R9BIH7 ENTREZGENE, UniProtKB/TrEMBL