SLC44A1 (solute carrier family 44 member 1) - Rat Genome Database

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Gene: SLC44A1 (solute carrier family 44 member 1) Pan paniscus
Analyze
Symbol: SLC44A1
Name: solute carrier family 44 member 1
RGD ID: 11822472
Description: ENCODES a protein that exhibits choline transmembrane transporter activity (inferred); ethanolamine transmembrane transporter activity (inferred); transmembrane transporter activity (inferred); INVOLVED IN choline transport (inferred); ethanolamine transport (inferred); phosphatidylcholine biosynthetic process (inferred); ASSOCIATED WITH Childhood-onset Neurodegeneration with Ataxia, Tremor, Optic Atrophy, and Cognitive Decline (ortholog); high grade glioma (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytosol (inferred); membrane (inferred); mitochondrial outer membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: choline transporter-like protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21133,946,592 - 34,140,946 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1933,948,960 - 34,143,295 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0976,417,869 - 76,612,233 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19104,599,572 - 104,737,620 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9104,597,755 - 104,737,620 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC44A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21133,946,592 - 34,140,946 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1933,948,960 - 34,143,295 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0976,417,869 - 76,612,233 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19104,599,572 - 104,737,620 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9104,597,755 - 104,737,620 (+)Ensemblpanpan1.1panPan2
SLC44A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389105,244,651 - 105,438,504 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9105,244,622 - 105,439,171 (+)EnsemblGRCh38hg38GRCh38
GRCh379108,006,932 - 108,200,785 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369107,046,750 - 107,193,503 (+)NCBINCBI36Build 36hg18NCBI36
Build 349105,086,662 - 105,233,235NCBI
Celera978,512,264 - 78,659,033 (+)NCBICelera
Cytogenetic Map9q31.1-q31.2NCBI
HuRef977,662,832 - 77,755,005 (+)NCBIHuRef
CHM1_19108,153,858 - 108,300,587 (+)NCBICHM1_1
T2T-CHM13v2.09117,419,258 - 117,613,150 (+)NCBIT2T-CHM13v2.0
Slc44a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39453,440,387 - 53,622,478 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl453,440,413 - 53,622,478 (+)EnsemblGRCm39 Ensembl
GRCm38453,440,387 - 53,622,478 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl453,440,413 - 53,622,478 (+)EnsemblGRCm38mm10GRCm38
MGSCv37453,453,285 - 53,635,350 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36453,461,757 - 53,643,578 (+)NCBIMGSCv36mm8
Celera453,407,313 - 53,583,394 (+)NCBICelera
Cytogenetic Map4B2NCBI
cM Map428.66NCBI
Slc44a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8572,857,323 - 73,037,279 (+)NCBIGRCr8
mRatBN7.2568,061,941 - 68,241,912 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl568,063,618 - 68,241,909 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx569,950,696 - 70,129,475 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0571,770,988 - 71,949,352 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0571,739,507 - 71,918,288 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0570,243,643 - 70,424,115 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl570,245,843 - 70,424,112 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0574,404,993 - 74,582,694 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4570,877,553 - 71,056,112 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1570,882,673 - 71,061,224 (+)NCBI
Celera566,958,117 - 67,136,227 (+)NCBICelera
Cytogenetic Map5q24NCBI
Slc44a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541921,092,380 - 21,231,070 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541921,092,583 - 21,277,294 (-)NCBIChiLan1.0ChiLan1.0
SLC44A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11161,120,858 - 61,313,250 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1161,120,176 - 61,312,590 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1159,582,008 - 59,773,782 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01162,256,080 - 62,448,662 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1162,256,143 - 62,448,667 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11160,775,818 - 60,926,372 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01160,794,294 - 60,986,332 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01161,487,297 - 61,679,198 (+)NCBIUU_Cfam_GSD_1.0
Slc44a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947176,322,852 - 176,499,812 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365596,818,459 - 6,904,139 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365596,766,307 - 6,903,286 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC44A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1246,548,497 - 246,760,514 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11246,548,461 - 246,760,527 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21276,190,887 - 276,354,123 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC44A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11234,068,642 - 34,261,635 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1234,067,318 - 34,261,402 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660358,378,802 - 8,572,470 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc44a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247585,960,094 - 6,151,653 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247585,963,281 - 6,152,870 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000034847   ⟹   ENSPPAP00000012185
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl9104,597,755 - 104,684,937 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000034852   ⟹   ENSPPAP00000012190
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl9104,599,572 - 104,737,620 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000034853   ⟹   ENSPPAP00000012191
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl9104,599,572 - 104,689,646 (+)Ensembl
RefSeq Acc Id: XM_034967911   ⟹   XP_034823802
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21133,997,304 - 34,140,932 (-)NCBI
NHGRI_mPanPan1934,003,088 - 34,143,279 (-)NCBI
Mhudiblu_PPA_v0976,417,915 - 76,558,125 (+)NCBI
RefSeq Acc Id: XM_034967913   ⟹   XP_034823804
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21133,995,028 - 34,140,946 (-)NCBI
NHGRI_mPanPan1933,997,394 - 34,143,295 (-)NCBI
Mhudiblu_PPA_v0976,417,915 - 76,569,749 (+)NCBI
RefSeq Acc Id: XM_034967914   ⟹   XP_034823805
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21133,946,592 - 34,140,932 (-)NCBI
NHGRI_mPanPan1933,948,960 - 34,143,279 (-)NCBI
Mhudiblu_PPA_v0976,417,869 - 76,612,233 (+)NCBI
RefSeq Acc Id: XM_055117767   ⟹   XP_054973742
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21133,946,592 - 34,140,932 (-)NCBI
NHGRI_mPanPan1933,948,960 - 34,143,279 (-)NCBI
RefSeq Acc Id: XM_055117768   ⟹   XP_054973743
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21133,946,592 - 34,140,932 (-)NCBI
NHGRI_mPanPan1933,948,960 - 34,143,279 (-)NCBI
RefSeq Acc Id: XR_010109015
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21134,004,718 - 34,140,818 (-)NCBI
RefSeq Acc Id: XP_034823805   ⟸   XM_034967914
- Peptide Label: isoform X5
- UniProtKB: A0A2R9A968 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034823804   ⟸   XM_034967913
- Peptide Label: isoform X4
- UniProtKB: A0A2R9A9T2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034823802   ⟸   XM_034967911
- Peptide Label: isoform X1
- UniProtKB: A0A2R9A964 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000012191   ⟸   ENSPPAT00000034853
Ensembl Acc Id: ENSPPAP00000012190   ⟸   ENSPPAT00000034852
Ensembl Acc Id: ENSPPAP00000012185   ⟸   ENSPPAT00000034847
RefSeq Acc Id: XP_054973742   ⟸   XM_055117767
- Peptide Label: isoform X2
- UniProtKB: A0A2R9A9T2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054973743   ⟸   XM_055117768
- Peptide Label: isoform X3
- UniProtKB: A0A2R9A968 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000029275 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000034847.1 UniProtKB/TrEMBL
  ENSPPAT00000034852.1 UniProtKB/TrEMBL
  ENSPPAT00000034853.1 UniProtKB/TrEMBL
InterPro Choline_transptr-like UniProtKB/TrEMBL
NCBI Gene SLC44A1 ENTREZGENE
PANTHER CHOLINE TRANSPORTER-LIKE PROTEIN 1 UniProtKB/TrEMBL
  PTHR12385 UniProtKB/TrEMBL
Pfam Choline_transpo UniProtKB/TrEMBL
UniProt A0A2R9A964 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9A968 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9A9T2 ENTREZGENE, UniProtKB/TrEMBL