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Gene: MSMP (microseminoprotein, prostate associated) Pan paniscus

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Symbol:

MSMP

Name:

microseminoprotein, prostate associated

RGD ID:

11811151

Description:

ENCODES a protein that exhibits CCR2 chemokine receptor binding (inferred); INVOLVED IN lymphocyte chemotaxis (inferred); monocyte chemotaxis (inferred); ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); anauxetic dysplasia (ortholog); autosomal recessive distal hereditary motor neuronopathy 2 (ortholog); FOUND IN cytoplasm (inferred); extracellular region (inferred); extracellular space (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

prostate-associated microseminoprotein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	88,834,238 - 88,835,377 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	88,837,677 - 88,841,205 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	35,603,948 - 35,605,085 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	36,406,679 - 36,407,845 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	36,406,679 - 36,407,845 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
MSMP	Bonobo	acromesomelic dysplasia, Maroteaux type		ISO	MSMP (Homo sapiens)	8554872	ClinVar Annotator: match by term: Acromesomelic dysplasia 1 and Maroteaux type	ClinVar	PMID:28492532
MSMP	Bonobo	anauxetic dysplasia		ISO	MSMP (Homo sapiens)	8554872	ClinVar Annotator: match by term: Anauxetic dysplasia	ClinVar	PMID:28492532
MSMP	Bonobo	autosomal recessive distal hereditary motor neuronopathy 2		ISO	MSMP (Homo sapiens)	8554872	ClinVar Annotator: match by term: Autosomal recessive distal spinal muscular atrophy 2	ClinVar	PMID:28492532
MSMP	Bonobo	distal arthrogryposis type 1A		ISO	MSMP (Homo sapiens)	8554872	ClinVar Annotator: match by term: Arthrogryposis more ...	ClinVar	PMID:28492532
MSMP	Bonobo	frontotemporal dementia and/or amyotrophic lateral sclerosis 6		ISO	MSMP (Homo sapiens)	8554872	ClinVar Annotator: match by term: Frontotemporal dementia and/or amyotrophic lateral sclerosis 6	ClinVar	PMID:28492532
MSMP	Bonobo	galactosemia		ISO	MSMP (Homo sapiens)	8554872	ClinVar Annotator: match by term: Deficiency of UDPglucose-hexose-1-phosphate uridylyltransferase	ClinVar	PMID:28492532
MSMP	Bonobo	hyperphosphatasia with impaired intellectual development syndrome 2		ISO	MSMP (Homo sapiens)	8554872	ClinVar Annotator: match by term: GLYCOSYLPHOSPHATIDYLINOSITOL BIOSYNTHESIS DEFECT 6	ClinVar	PMID:22683086 more ...
MSMP	Bonobo	paraplegia		ISO	MSMP (Homo sapiens)	8554872	ClinVar Annotator: match by term: Spastic paraplegia	ClinVar	PMID:23332916 more ...
MSMP	Bonobo	primary ciliary dyskinesia		ISO	MSMP (Homo sapiens)	8554872	ClinVar Annotator: match by term: Primary ciliary dyskinesia	ClinVar	PMID:28492532

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
MSMP	Bonobo	lymphocyte chemotaxis	involved_in	IEA	UniProtKB:Q1L6U9 and ensembl:ENSP00000419194	150520179		Ensembl	GO_REF:0000107
MSMP	Bonobo	monocyte chemotaxis	involved_in	IEA	UniProtKB:Q1L6U9 and ensembl:ENSP00000419194	150520179		Ensembl	GO_REF:0000107

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
MSMP	Bonobo	cytoplasm	located_in	IEA	UniProtKB:Q1L6U9 and ensembl:ENSP00000419194	150520179		Ensembl	GO_REF:0000107
MSMP	Bonobo	cytoplasm	located_in	IEA	PANTHER:PTN008306763	150520179		TreeGrafter	GO_REF:0000118
MSMP	Bonobo	extracellular region	located_in	IEA	UniProtKB-SubCell:SL-0243	150520179		UniProt	GO_REF:0000044
MSMP	Bonobo	extracellular region	located_in	IEA	ARBA:ARBA00027128	150520179		UniProt	GO_REF:0000117
MSMP	Bonobo	extracellular region	located_in	IEA	UniProtKB-KW:KW-0964	150520179		UniProt	GO_REF:0000043
MSMP	Bonobo	extracellular space	located_in	IEA	PANTHER:PTN008306763	150520179		TreeGrafter	GO_REF:0000118
MSMP	Bonobo	extracellular space	located_in	IEA	UniProtKB:Q1L6U9 and ensembl:ENSP00000419194	150520179		Ensembl	GO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
MSMP	Bonobo	CCR2 chemokine receptor binding	enables	IEA	UniProtKB:Q1L6U9 and ensembl:ENSP00000419194	150520179		Ensembl	GO_REF:0000107

PMID:30032202

MSMP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	88,834,238 - 88,835,377 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	88,837,677 - 88,841,205 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	35,603,948 - 35,605,085 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	36,406,679 - 36,407,845 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	36,406,679 - 36,407,845 (-)	Ensembl	panpan1.1		panPan2

MSMP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	35,752,990 - 35,754,276 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	35,752,990 - 35,756,613 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	35,752,987 - 35,754,273 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	35,742,991 - 35,744,272 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	9	35,686,542 - 35,687,823 (-)	NCBI		Celera
Cytogenetic Map	9	p13.3	NCBI
HuRef	9	35,708,606 - 35,709,893 (-)	NCBI		HuRef
CHM1_1	9	35,753,391 - 35,754,678 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	35,773,671 - 35,774,957 (-)	NCBI		T2T-CHM13v2.0

Msmp
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	43,583,216 - 43,584,494 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	43,583,216 - 43,584,494 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	43,583,216 - 43,584,494 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	43,583,216 - 43,584,494 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	43,596,088 - 43,597,366 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	43,596,185 - 43,597,140 (-)	NCBI		MGSCv36	mm8
Celera	4	43,617,203 - 43,618,481 (-)	NCBI		Celera
Cytogenetic Map	4	A5	NCBI
cM Map	4	23.05	NCBI

Msmp
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	62,634,721 - 62,635,771 (-)	NCBI		GRCr8
mRatBN7.2	5	57,838,935 - 57,839,985 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	57,838,935 - 57,839,985 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	59,818,776 - 59,819,826 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	61,637,592 - 61,638,642 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	61,609,062 - 61,610,112 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	59,084,626 - 59,085,676 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	59,084,626 - 59,085,676 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	63,609,220 - 63,610,270 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	60,061,942 - 60,062,992 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	56,419,506 - 56,420,556 (-)	NCBI		Celera
Cytogenetic Map	5	q22	NCBI

Msmp
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955472	549,115 - 550,247 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955472	549,115 - 550,247 (+)	NCBI	ChiLan1.0	ChiLan1.0

MSMP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	52,280,528 - 52,281,559 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	52,280,528 - 52,281,541 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	50,847,989 - 50,849,295 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	53,345,359 - 53,346,665 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	53,345,455 - 53,346,468 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	51,889,902 - 51,891,208 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	51,873,426 - 51,874,732 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	52,575,573 - 52,576,879 (-)	NCBI		UU_Cfam_GSD_1.0

Msmp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	167,198,846 - 167,199,963 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936524	3,746,502 - 3,747,525 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936524	3,746,426 - 3,751,124 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MSMP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	236,472,424 - 236,473,862 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	236,472,652 - 236,473,664 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	264,197,738 - 264,199,910 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MSMP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	44,847,109 - 44,848,263 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	44,847,129 - 44,848,150 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	41,951,752 - 41,952,919 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Msmp
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624868	5,038,926 - 5,041,563 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624868	5,040,442 - 5,041,533 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_003829843	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000056859 ⟹ ENSPPAP00000033978

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	9	36,406,679 - 36,407,845 (-)	Ensembl

RefSeq Acc Id:

XM_003829843 ⟹ XP_003829891

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	11	88,834,238 - 88,835,377 (+)	NCBI
NHGRI_mPanPan1	9	88,840,176 - 88,841,205 (+)	NCBI
Mhudiblu_PPA_v0	9	35,603,948 - 35,605,085 (-)	NCBI
PanPan1.1	9	36,406,679 - 36,407,845 (-)	NCBI

Sequence:

show sequence

AGGGTCTGAGAGGGCTGTGCAGCAGCAATGGCCCTAAGGATGCTCTGGGCTGGACAGGCCAAGGGGATCCTAGGAGGCTGGGGGATCATCTGCTTGGTGATGTCTCTACTCCTCCAGCACCCAGGAGT
CTACAGCAAGTGCTACTTCCAAGCTCAAGCCCCCTGTCACTATGAGGGGAAATATTTCACCCTGGGCGAGTCTTGGCTCCGCAAGGACTGTTTCCATTGCACCTGTCTGCATCCTGTTGGCGTGGGCT
GCTGTGACACGTCCCAGCATCCCATCGACTTCCCGGCTGGGTGTGAGGTACGTCAGGAGGCAGGAACCTGCCAGTTCTCCTTGGTGCAAAAATCTGACCCTCGGCTGCCCTGCAAAGGGGGAGGGCCT
GACCCAGAATGGGGCTCAGCCAACACCCCTGTTCCTGGGGCTCCTGCTCCCCACTCCAGCTAAACTCAACTGATCATCCATCTGCTGACTGCTCACTGCTGCTGCCACTTCCAGGGAAACCACTAGCA
GCTGCCAATGTATTCTGAACAAATAAATTAATGCTATAGCTGAAA

hide sequence


Protein RefSeqs	XP_003829891	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000033978.1

RefSeq Acc Id:	XP_003829891 ⟸ XM_003829843
- UniProtKB:	A0A2R9BWC0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MALRMLWAGQAKGILGGWGIICLVMSLLLQHPGVYSKCYFQAQAPCHYEGKYFTLGESWLRKDCFHCTCLHPVGVGCCDTSQHPIDFPAGCEVRQEAGTCQFSLVQKSDPRLPCKGGGPDPEWGSANT PVPGAPAPHSS hide sequence

Ensembl Acc Id:

ENSPPAP00000033978 ⟸ ENSPPAT00000056859

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000039857	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000056859.1	UniProtKB/TrEMBL
Gene3D-CATH	Beta-microseminoprotein (PSP94) domain	UniProtKB/TrEMBL
InterPro	PSP94	UniProtKB/TrEMBL
KEGG Report	pps:100990357	UniProtKB/TrEMBL
NCBI Gene	MSMP	ENTREZGENE
PANTHER	PROSTATE-ASSOCIATED MICROSEMINOPROTEIN	UniProtKB/TrEMBL
	PTHR10500	UniProtKB/TrEMBL
Pfam	PSP94	UniProtKB/TrEMBL
UniProt	A0A2R9BWC0	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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