LOC100967363 (olfactory receptor 2V1)

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Gene: LOC100967363 (olfactory receptor 2V1) Pan paniscus

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Symbol:

LOC100967363 (Ensembl: OR2V1)

Name:

olfactory receptor 2V1 (Ensembl:olfactory receptor family 2 subfamily V member 1)

RGD ID:

11795901

Description:

ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); FOUND IN membrane (inferred); plasma membrane (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	176,113,799 - 176,122,076 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	174,277,865 - 174,286,142 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	176,294,553 - 176,295,674 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	183,608,181 - 183,609,128 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	183,608,181 - 183,609,128 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

detection of chemical stimulus involved in sensory perception of smell (IEA)

G protein-coupled receptor signaling pathway (IEA)

sensory perception of smell (IEA)

Cellular Component

membrane (IEA)

plasma membrane (IEA)

Molecular Function

G protein-coupled receptor activity (IEA)

olfactory receptor activity (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

LOC100967363
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	176,113,799 - 176,122,076 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	174,277,865 - 174,286,142 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	176,294,553 - 176,295,674 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	183,608,181 - 183,609,128 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	183,608,181 - 183,609,128 (-)	Ensembl	panpan1.1		panPan2

OR2V1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	181,123,122 - 181,131,169 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	181,123,122 - 181,131,169 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	180,550,122 - 180,558,169 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	180,483,866 - 180,485,010 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	5	176,178,241 - 176,179,185 (-)	NCBI		Celera
Cytogenetic Map	5	q35.3	NCBI
HuRef	5	175,279,163 - 175,280,110 (-)	NCBI		HuRef
CHM1_1	5	179,983,582 - 179,984,529 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	181,683,156 - 181,691,193 (-)	NCBI		T2T-CHM13v2.0

Or2v1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	49,025,000 - 49,026,214 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	48,941,560 - 49,026,214 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	49,134,173 - 49,135,387 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	48,978,889 - 49,135,387 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	48,864,235 - 48,948,889 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	48,894,156 - 48,978,810 (+)	NCBI		MGSCv36	mm8
Celera	11	53,597,319 - 53,697,881 (+)	NCBI		Celera
Cytogenetic Map	11	B1.2	NCBI
cM Map	11	29.05	NCBI

Or2v1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	33,901,067 - 33,905,416 (+)	NCBI		GRCr8
mRatBN7.2	10	33,399,891 - 33,404,298 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	33,398,913 - 33,404,401 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	38,094,518 - 38,095,465 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	6,632,933 - 6,633,880 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	33,088,160 - 33,089,107 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	34,380,438 - 34,384,343 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	34,383,396 - 34,384,343 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	34,158,959 - 34,162,957 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	34,303,922 - 34,304,869 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	34,304,970 - 34,305,918 (+)	NCBI
Celera	10	32,789,151 - 32,790,098 (+)	NCBI		Celera
Cytogenetic Map	10	q21	NCBI

OR2V1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	340,614 - 341,594 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	340,499 - 361,618 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	399,283 - 400,230 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	302,732 - 303,679 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	11	274,931 - 275,878 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	362,508 - 363,455 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	523,940 - 524,887 (-)	NCBI		UU_Cfam_GSD_1.0

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003806743	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000016497 ⟹ ENSPPAP00000003588

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	5	183,608,181 - 183,609,128 (-)	Ensembl

RefSeq Acc Id:

XM_003806743 ⟹ XP_003806791

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	4	176,113,799 - 176,122,076 (-)	NCBI
NHGRI_mPanPan1	5	174,277,865 - 174,286,142 (-)	NCBI
Mhudiblu_PPA_v0	5	176,294,553 - 176,295,674 (-)	NCBI
PanPan1.1	5	183,608,181 - 183,609,128 (-)	NCBI

Sequence:

show sequence

ATGGGAAGATGGGTGAACCAGTCCTACACAGATGGCTTCTTCCTCTTGGGCATCTTTTCCCACA
GTACTGCTGACCTTGTCCTCTTCTCCGTGGTTATGGCGGTCTTCACAGTGGCCCTCTGTGGGAA
TGTCCTCCTCATCTTCATCATCTACCTGGACGCTGGACTTCACACCCCCATGTACTTCTTCCTC
AGCCAGCTCTCCCTCATGGACCTCATGTTGGTCTGTAACATTGTGCCAAAGATGGCAGCCAACT
TCCTGTCTGGCAGGAAGTCCATCTCCTTTGTGGGCTGTGGCATACAAATTGGCTTTTTTGTCTG
TCTTGTGGGATCTGAGGGGCTCTTGCTGGGACTCATGGCTTATGACCGCTACGTGGCCGTTAGC
CACCCACTTCACTATCCCATCCTCATGAATCAGAAGGTCTGTCTCCAGATTACTGGGAGCTCCT
GGGCCTTTGGGATAATAGATGGAGTGATTCAGATGGTGGCAGCCATGAGCTTACCTTACTGTGG
CTCAAGGAGCGTGGATCACTTTTTCTGTGAGGTACAAGCTTTATTGAAGCTGGCCTGTGCAGAC
ACTTCCCTTTTTGACACCCTCCTCTTTGCTTGCTGTGTCTTCATGCTTCTCCTTCCCTTCTCCA
TCATCATGGCCTCCTATGCTTGCATCCTAGGGGCTGTGCTCCGAATACGCTCTGCTCAGGCCTG
GAAAAAAGCCCTGGCCACCTGCTCCTCCCACCTAACAGCTGTCACCCTCTTCTATGGGGCAGCC
ATGTTCATGTACCTGAGGCCTAGGCGCTACCGGGCCCCTAGCCATGACAAGGTGGCCTCTATCT
TCTACACAGTCCTTACTCCCATGCTGAACCCCCTCATTTACAGCTTGAGGAATGGGGAGGTGAT
GGGGGCACTGAGGAAGGGACTGGACCGCTGCAGGATTGGCAGCCAGCACTGA

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Protein Sequences


Protein RefSeqs	XP_003806791	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000003588.1

RefSeq Acc Id:

XP_003806791 ⟸ XM_003806743

- UniProtKB:

A0A2R8ZEX9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGRWVNQSYTDGFFLLGIFSHSTADLVLFSVVMAVFTVALCGNVLLIFIIYLDAGLHTPMYFFL
SQLSLMDLMLVCNIVPKMAANFLSGRKSISFVGCGIQIGFFVCLVGSEGLLLGLMAYDRYVAVS
HPLHYPILMNQKVCLQITGSSWAFGIIDGVIQMVAAMSLPYCGSRSVDHFFCEVQALLKLACAD
TSLFDTLLFACCVFMLLLPFSIIMASYACILGAVLRIRSAQAWKKALATCSSHLTAVTLFYGAA
MFMYLRPRRYRAPSHDKVASIFYTVLTPMLNPLIYSLRNGEVMGALRKGLDRCRIGSQH

hide sequence

Ensembl Acc Id:

ENSPPAP00000003588 ⟸ ENSPPAT00000016497

Protein Domains

G-protein coupled receptors family 1 profile

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000015061	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000016497.1	UniProtKB/TrEMBL
Gene3D-CATH	Rhodopsin 7-helix transmembrane proteins	UniProtKB/TrEMBL
InterPro	GPCR_Rhodpsn	UniProtKB/TrEMBL
	GPCR_Rhodpsn_7TM	UniProtKB/TrEMBL
	Olfact_rcpt	UniProtKB/TrEMBL
KEGG Report	pps:100967363	UniProtKB/TrEMBL
NCBI Gene	LOC100967363	ENTREZGENE
PANTHER	OLFACTORY RECEPTOR	UniProtKB/TrEMBL
	OLFACTORY RECEPTOR 2V1	UniProtKB/TrEMBL
Pfam	7tm_4	UniProtKB/TrEMBL
PRINTS	GPCRRHODOPSN	UniProtKB/TrEMBL
	OLFACTORYR	UniProtKB/TrEMBL
PROSITE	G_PROTEIN_RECEP_F1_1	UniProtKB/TrEMBL
	G_PROTEIN_RECEP_F1_2	UniProtKB/TrEMBL
Superfamily-SCOP	Family A G protein-coupled receptor-like	UniProtKB/TrEMBL
UniProt	A0A2R8ZEX9	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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