Or2v1 (olfactory receptor family 2 subfamily V member 1) - Rat Genome Database

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Gene: Or2v1 (olfactory receptor family 2 subfamily V member 1) Mus musculus
Analyze
Symbol: Or2v1
Name: olfactory receptor family 2 subfamily V member 1
RGD ID: 1550930
MGI Page MGI
Description: Predicted to enable olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and sensory perception of smell. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human OR2V1 (olfactory receptor family 2 subfamily V member 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: GA_x6K02T2QP88-6300500-6299553; IF; IF7; MOR276; MOR276-1; olfactory receptor 276-1; olfactory receptor 2V1; olfactory receptor 56; olfactory receptor F7; olfactory receptor G3; olfactory receptor I-G7; olfactory receptor MOR276-1; Olfr56
RGD Orthologs
Human
Rat
Bonobo
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391149,025,000 - 49,026,214 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1148,941,560 - 49,026,214 (+)EnsemblGRCm39 Ensembl
GRCm381149,134,173 - 49,135,387 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1148,978,889 - 49,135,387 (+)EnsemblGRCm38mm10GRCm38
MGSCv371148,864,235 - 48,948,889 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361148,894,156 - 48,978,810 (+)NCBIMGSCv36mm8
Celera1153,597,319 - 53,697,881 (+)NCBICelera
Cytogenetic Map11B1.2NCBI
cM Map1129.05NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9875846   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11802173   PMID:11875048   PMID:12477932   PMID:14611657   PMID:16141072   PMID:16141073   PMID:21873635  
PMID:32295537  


Genomics

Comparative Map Data
Or2v1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391149,025,000 - 49,026,214 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1148,941,560 - 49,026,214 (+)EnsemblGRCm39 Ensembl
GRCm381149,134,173 - 49,135,387 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1148,978,889 - 49,135,387 (+)EnsemblGRCm38mm10GRCm38
MGSCv371148,864,235 - 48,948,889 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361148,894,156 - 48,978,810 (+)NCBIMGSCv36mm8
Celera1153,597,319 - 53,697,881 (+)NCBICelera
Cytogenetic Map11B1.2NCBI
cM Map1129.05NCBI
OR2V1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385181,123,122 - 181,131,169 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5181,123,122 - 181,131,169 (-)EnsemblGRCh38hg38GRCh38
GRCh375180,550,122 - 180,558,169 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365180,483,866 - 180,485,010 (-)NCBINCBI36Build 36hg18NCBI36
Celera5176,178,241 - 176,179,185 (-)NCBICelera
Cytogenetic Map5q35.3NCBI
HuRef5175,279,163 - 175,280,110 (-)NCBIHuRef
CHM1_15179,983,582 - 179,984,529 (-)NCBICHM1_1
T2T-CHM13v2.05181,683,156 - 181,691,193 (-)NCBIT2T-CHM13v2.0
Or2v1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81033,901,067 - 33,905,416 (+)NCBIGRCr8
mRatBN7.21033,399,891 - 33,404,298 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1033,398,913 - 33,404,401 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1038,094,518 - 38,095,465 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0106,632,933 - 6,633,880 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01033,088,160 - 33,089,107 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01034,380,438 - 34,384,343 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1034,383,396 - 34,384,343 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01034,158,959 - 34,162,957 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41034,303,922 - 34,304,869 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11034,304,970 - 34,305,918 (+)NCBI
Celera1032,789,151 - 32,790,098 (+)NCBICelera
Cytogenetic Map10q21NCBI
LOC100967363
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24176,113,799 - 176,122,076 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15174,277,865 - 174,286,142 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05176,294,553 - 176,295,674 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15183,608,181 - 183,609,128 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5183,608,181 - 183,609,128 (-)Ensemblpanpan1.1panPan2
OR2V1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.111340,614 - 341,594 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl11340,499 - 361,618 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha11399,283 - 400,230 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.011302,732 - 303,679 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.111274,931 - 275,878 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.011362,508 - 363,455 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.011523,940 - 524,887 (-)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:231
Count of miRNA genes:76
Interacting mature miRNAs:77
Transcripts:ENSMUST00000056759, ENSMUST00000102785, ENSMUST00000179282
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111928257753282715Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse
12910801Pwbwq14_mpost-weaning body weight QTL 14 (mouse)112719805750636094Mouse
12910804Pwbwq16_mpost-weaning body weight QTL 16 (mouse)112719805750636094Mouse
12910806Pwbwq15_mpost-weaning body weight QTL 15 (mouse)112719805750636094Mouse
12910817Pwgrq20_mpost-weaning growth rate QTL 20 (mouse)112719805750636094Mouse
12910818Ogrq5_moverall growth rate QTL 5 (mouse)112719805750636094Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113776858060402716Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
10053675Eae44b_mexperimental allergic encephalomyelitis susceptibility 44b (mouse)Not determined113995072854094448Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
1300713Vmbic10_mventral midbrain iron content 10 (mouse)Not determined114277262654081064Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
13452402Hipmt3_mhippocampal morphometry trait 3 (mouse)114797732550277325Mouse

Markers in Region
33.MHAa63c9.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381149,055,212 - 49,055,296UniSTSGRCm38
GRCm381148,983,346 - 48,983,430UniSTSGRCm38
MGSCv371148,868,714 - 48,868,798UniSTSGRCm37
MGSCv371148,796,848 - 48,796,932UniSTSGRCm37
Celera1153,602,011 - 53,602,095UniSTS
Cytogenetic Map11B1.2UniSTS
Whitehead_YAC11 UniSTS
48.MMHAP86FRH12.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381149,082,132 - 49,082,310UniSTSGRCm38
MGSCv371148,895,634 - 48,895,812UniSTSGRCm37
Celera1153,644,464 - 53,644,642UniSTS
Cytogenetic Map11B1.2UniSTS
Whitehead_YAC11 UniSTS
UniSTS:489323  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381149,112,777 - 49,113,757UniSTSGRCm38
MGSCv371148,926,279 - 48,927,259UniSTSGRCm37
Celera1153,675,193 - 53,676,173UniSTS
Cytogenetic Map11B1.2UniSTS
Cytogenetic Map11B1UniSTS
Pcbp2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381148,996,863 - 48,997,276UniSTSGRCm38
MGSCv371148,810,365 - 48,810,778UniSTSGRCm37
Celera1153,615,569 - 53,615,982UniSTS
Cytogenetic Map11B1.2UniSTS
Cytogenetic Map15F1UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000056759   ⟹   ENSMUSP00000058544
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1148,869,716 - 49,026,214 (+)Ensembl
GRCm38.p6 Ensembl1148,978,889 - 49,135,387 (+)Ensembl
RefSeq Acc Id: ENSMUST00000102785   ⟹   ENSMUSP00000099846
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1148,941,560 - 49,026,214 (+)Ensembl
GRCm38.p6 Ensembl1149,050,733 - 49,135,387 (+)Ensembl
RefSeq Acc Id: ENSMUST00000179282   ⟹   ENSMUSP00000136647
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1148,869,716 - 49,026,214 (+)Ensembl
GRCm38.p6 Ensembl1148,978,889 - 49,135,387 (+)Ensembl
RefSeq Acc Id: ENSMUST00000203149   ⟹   ENSMUSP00000145429
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1148,977,879 - 49,026,147 (+)Ensembl
GRCm38.p6 Ensembl1149,087,052 - 49,135,320 (+)Ensembl
RefSeq Acc Id: ENSMUST00000203412
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1148,977,861 - 49,017,272 (+)Ensembl
GRCm38.p6 Ensembl1149,087,034 - 49,126,445 (+)Ensembl
RefSeq Acc Id: ENSMUST00000203810   ⟹   ENSMUSP00000144951
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1148,977,879 - 49,026,146 (+)Ensembl
GRCm38.p6 Ensembl1149,087,052 - 49,135,319 (+)Ensembl
RefSeq Acc Id: ENSMUST00000238881   ⟹   ENSMUSP00000158965
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1149,020,971 - 49,026,147 (+)Ensembl
GRCm38.p6 Ensembl1149,130,144 - 49,135,320 (+)Ensembl
RefSeq Acc Id: ENSMUST00000239127   ⟹   ENSMUSP00000159088
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1149,020,971 - 49,026,214 (+)Ensembl
GRCm38.p6 Ensembl1149,130,144 - 49,135,387 (+)Ensembl
RefSeq Acc Id: NM_010999   ⟹   NP_035129
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391149,025,000 - 49,026,214 (+)NCBI
GRCm381149,134,173 - 49,135,387 (+)NCBI
MGSCv371148,864,235 - 48,948,889 (+)RGD
Celera1153,597,319 - 53,697,881 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_035129   ⟸   NM_010999
- UniProtKB: Q9QUL1 (UniProtKB/Swiss-Prot),   Q8VGD6 (UniProtKB/Swiss-Prot),   Q8BKF2 (UniProtKB/Swiss-Prot),   Q9Z1U2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000144951   ⟸   ENSMUST00000203810
RefSeq Acc Id: ENSMUSP00000145429   ⟸   ENSMUST00000203149
RefSeq Acc Id: ENSMUSP00000159088   ⟸   ENSMUST00000239127
RefSeq Acc Id: ENSMUSP00000136647   ⟸   ENSMUST00000179282
RefSeq Acc Id: ENSMUSP00000158965   ⟸   ENSMUST00000238881
RefSeq Acc Id: ENSMUSP00000058544   ⟸   ENSMUST00000056759
RefSeq Acc Id: ENSMUSP00000099846   ⟸   ENSMUST00000102785

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8VGD6-F1-model_v2 AlphaFold Q8VGD6 1-315 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1333785 AgrOrtholog
Ensembl Genes ENSMUSG00000040328 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000056759.11 UniProtKB/Swiss-Prot
  ENSMUST00000102785.4 UniProtKB/Swiss-Prot
  ENSMUST00000179282.8 UniProtKB/Swiss-Prot
  ENSMUST00000203149.3 UniProtKB/Swiss-Prot
  ENSMUST00000203810.3 UniProtKB/Swiss-Prot
  ENSMUST00000238881 ENTREZGENE
  ENSMUST00000238881.2 UniProtKB/Swiss-Prot
  ENSMUST00000239127.2 UniProtKB/Swiss-Prot
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot
InterPro GPCR_Rhodpsn UniProtKB/Swiss-Prot
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot
  Olfact_rcpt UniProtKB/Swiss-Prot
KEGG Report mmu:18356 UniProtKB/Swiss-Prot
MGD MGI:1333785 ENTREZGENE
NCBI Gene 18356 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/Swiss-Prot
  OLFACTORY RECEPTOR 2V1 UniProtKB/Swiss-Prot
Pfam 7tm_4 UniProtKB/Swiss-Prot
PhenoGen Or2v1 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/Swiss-Prot
  OLFACTORYR UniProtKB/Swiss-Prot
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/Swiss-Prot
  G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot
UniProt OLF56_MOUSE UniProtKB/Swiss-Prot
  Q8BKF2 ENTREZGENE
  Q8VGD6 ENTREZGENE
  Q9QUL1 ENTREZGENE
  Q9Z1U2 ENTREZGENE
UniProt Secondary Q8BKF2 UniProtKB/Swiss-Prot
  Q9QUL1 UniProtKB/Swiss-Prot
  Q9Z1U2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-24 Or2v1  olfactory receptor family 2 subfamily V member 1  Olfr56  olfactory receptor 56  Symbol and/or name change 5135510 APPROVED