ATXN7 (ataxin 7) - Rat Genome Database

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Gene: ATXN7 (ataxin 7) Pan paniscus
Analyze
Symbol: ATXN7
Name: ataxin 7
RGD ID: 11789959
Description: ENCODES a protein that exhibits chromatin binding (ortholog); INVOLVED IN insulin-like growth factor receptor signaling pathway (ortholog); negative regulation of insulin-like growth factor receptor signaling pathway (ortholog); negative regulation of phosphorylation (ortholog); PARTICIPATES IN RNA polymerase II transcription initiation pathway; ASSOCIATED WITH Abnormal Reflexes (ortholog); Arsenic Poisoning (ortholog); Gait Ataxia (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ataxin-7; LOC103784976; uncharacterized LOC103784976
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2263,784,589 - 63,922,070 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1363,789,226 - 63,929,576 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0363,766,480 - 63,906,913 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1365,249,146 - 65,284,762 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl365,194,703 - 65,280,879 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
ATXN7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2263,784,589 - 63,922,070 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1363,789,226 - 63,929,576 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0363,766,480 - 63,906,913 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1365,249,146 - 65,284,762 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl365,194,703 - 65,280,879 (+)Ensemblpanpan1.1panPan2
ATXN7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38363,863,144 - 64,003,462 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl363,863,155 - 64,003,462 (+)EnsemblGRCh38hg38GRCh38
GRCh37363,848,820 - 63,989,138 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36363,825,273 - 63,961,367 (+)NCBINCBI36Build 36hg18NCBI36
Build 34363,825,272 - 63,961,367NCBI
Celera363,866,997 - 64,005,909 (+)NCBICelera
Cytogenetic Map3p14.1NCBI
HuRef363,947,138 - 64,086,205 (+)NCBIHuRef
CHM1_1363,801,559 - 63,940,470 (+)NCBICHM1_1
T2T-CHM13v2.0363,906,771 - 64,047,076 (+)NCBIT2T-CHM13v2.0
Atxn7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39148,358,358 - 8,508,324 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl148,362,461 - 8,508,323 (-)EnsemblGRCm39 Ensembl
GRCm381413,961,283 - 14,107,316 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1413,961,440 - 14,107,302 (+)EnsemblGRCm38mm10GRCm38
MGSCv371414,845,005 - 14,939,816 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361412,805,758 - 12,897,327 (+)NCBIMGSCv36mm8
Celera149,673,051 - 9,770,917 (+)NCBICelera
Cytogenetic Map14A1NCBI
cM Map147.08NCBI
Atxn7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81513,547,859 - 13,693,311 (-)NCBIGRCr8
mRatBN7.21511,117,360 - 11,262,818 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1511,118,886 - 11,263,106 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01512,421,432 - 12,569,649 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1512,425,175 - 12,513,931 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01516,452,707 - 16,597,558 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41512,669,541 - 12,758,262 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1511,124,309 - 11,269,085 (-)NCBICelera
Cytogenetic Map15p16NCBI
Atxn7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555171,892,757 - 1,980,524 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555171,897,050 - 1,980,428 (-)NCBIChiLan1.0ChiLan1.0
ATXN7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12027,226,957 - 27,335,327 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2027,224,375 - 27,333,445 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2027,151,293 - 27,291,175 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02027,463,951 - 27,603,969 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2027,465,495 - 27,556,457 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12026,960,721 - 27,100,621 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02027,311,169 - 27,450,739 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02027,415,760 - 27,555,632 (-)NCBIUU_Cfam_GSD_1.0
Atxn7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118164,032,909 - 164,167,774 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366372,426,498 - 2,508,686 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366372,422,260 - 2,508,681 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATXN7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1345,401,127 - 45,498,180 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11345,356,350 - 45,514,816 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21349,908,555 - 49,956,739 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATXN7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12224,897,045 - 25,046,188 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2224,945,248 - 25,033,687 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041141,766,784 - 141,918,997 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atxn7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248881,914,063 - 1,999,755 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248881,910,385 - 2,045,038 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000054105   ⟹   ENSPPAP00000031241
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl365,194,703 - 65,280,879 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000054109   ⟹   ENSPPAP00000031245
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl365,194,703 - 65,280,787 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000054112   ⟹   ENSPPAP00000031248
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl365,257,575 - 65,280,787 (+)Ensembl
RefSeq Acc Id: XM_034956827   ⟹   XP_034812718
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2263,784,589 - 63,922,070 (+)NCBI
NHGRI_mPanPan1363,789,244 - 63,929,576 (+)NCBI
Mhudiblu_PPA_v0363,766,627 - 63,906,913 (+)NCBI
RefSeq Acc Id: XM_055110101   ⟹   XP_054966076
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2263,833,222 - 63,922,070 (+)NCBI
NHGRI_mPanPan1363,845,940 - 63,929,576 (+)NCBI
RefSeq Acc Id: XM_063602795   ⟹   XP_063458865
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2263,832,011 - 63,922,070 (+)NCBI
RefSeq Acc Id: XM_063602796   ⟹   XP_063458866
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2263,832,011 - 63,922,070 (+)NCBI
RefSeq Acc Id: XM_063602797   ⟹   XP_063458867
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2263,832,011 - 63,922,070 (+)NCBI
RefSeq Acc Id: XM_063602798   ⟹   XP_063458868
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2263,832,011 - 63,922,070 (+)NCBI
RefSeq Acc Id: XM_063602799   ⟹   XP_063458869
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2263,833,221 - 63,922,070 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_034812718   ⟸   XM_034956827
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BNK7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000031241   ⟸   ENSPPAT00000054105
RefSeq Acc Id: ENSPPAP00000031245   ⟸   ENSPPAT00000054109
RefSeq Acc Id: ENSPPAP00000031248   ⟸   ENSPPAT00000054112
RefSeq Acc Id: XP_054966076   ⟸   XM_055110101
- Peptide Label: isoform X6
- UniProtKB: A0A2R9BNJ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063458865   ⟸   XM_063602795
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063458867   ⟸   XM_063602797
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063458866   ⟸   XM_063602796
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063458868   ⟸   XM_063602798
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063458869   ⟸   XM_063602799
- Peptide Label: isoform X5
Protein Domains
SCA7


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000038542 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000054105.1 UniProtKB/TrEMBL
  ENSPPAT00000054109.1 UniProtKB/TrEMBL
  ENSPPAT00000054112.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.670 UniProtKB/TrEMBL
InterPro SCA7_dom UniProtKB/TrEMBL
NCBI Gene ATXN7 ENTREZGENE
PANTHER ATAXIN 7 RELATED UniProtKB/TrEMBL
  PTHR15117:SF2 UniProtKB/TrEMBL
Pfam SCA7 UniProtKB/TrEMBL
PROSITE SCA7 UniProtKB/TrEMBL
UniProt A0A2R9BNJ6 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BNK7 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BS52_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-11 ATXN7  ataxin 7  LOC103784976  uncharacterized LOC103784976  Data merged from RGD:11793911 737654 PROVISIONAL