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Gene: LOC100970443 (olfactory receptor 10S1) Pan paniscus

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Symbol:

LOC100970443

Name:

olfactory receptor 10S1

RGD ID:

11773628

Description:

ASSOCIATED WITH chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); holoprosencephaly 11 (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	124,673,549 - 124,674,514 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	125,778,019 - 125,778,984 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	118,805,119 - 118,806,084 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	122,722,014 - 122,722,979 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
LOC100970443	Bonobo	chromosome 11 partial duplication syndrome		ISO	OR10S1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Distal trisomy 11q	ClinVar	PMID:25741868
LOC100970443	Bonobo	Dwarfism		ISO	OR10S1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Short stature	ClinVar	PMID:32581362
LOC100970443	Bonobo	holoprosencephaly 11		ISO	OR10S1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Holoprosencephaly 11	ClinVar	PMID:28492532
LOC100970443	Bonobo	schizophrenia		ISO	OR10S1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Schizophrenia	ClinVar	PMID:21681106 and PMID:30208311

PMID:22301074

LOC100970443
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	124,673,549 - 124,674,514 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	125,778,019 - 125,778,984 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	118,805,119 - 118,806,084 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	122,722,014 - 122,722,979 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

OR10S1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	123,976,661 - 123,977,781 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	123,976,661 - 123,977,781 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	123,847,368 - 123,848,488 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	123,352,613 - 123,353,608 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	123,352,612 - 123,353,608	NCBI
Celera	11	121,006,598 - 121,007,593 (-)	NCBI		Celera
Cytogenetic Map	11	q24.1	NCBI
HuRef	11	119,788,191 - 119,789,186 (-)	NCBI		HuRef
CHM1_1	11	123,733,565 - 123,734,560 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	124,005,286 - 124,006,406 (-)	NCBI		T2T-CHM13v2.0

Or10s1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	39,985,593 - 39,986,558 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	39,985,125 - 39,990,700 (+)	Ensembl		GRCm39 Ensembl
GRCm38	9	40,074,297 - 40,075,262 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	40,073,829 - 40,079,404 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	39,881,882 - 39,882,847 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	39,824,868 - 39,825,833 (+)	NCBI		MGSCv36	mm8
Celera	9	37,313,177 - 37,314,142 (+)	NCBI		Celera
Cytogenetic Map	9	A5.1	NCBI
cM Map	9	21.36	NCBI

Or10s1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	49,274,175 - 49,275,225 (+)	NCBI		GRCr8
mRatBN7.2	8	40,377,018 - 40,378,068 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	40,377,103 - 40,378,068 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	45,861,309 - 45,862,262 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	44,145,361 - 44,146,314 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	42,007,501 - 42,008,454 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	43,872,728 - 43,873,681 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	43,872,728 - 43,873,681 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	61,647,010 - 61,647,963 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	42,966,247 - 42,967,200 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	42,975,012 - 42,975,966 (+)	NCBI
Celera	8	40,001,975 - 40,002,928 (+)	NCBI		Celera
Cytogenetic Map	8	q22	NCBI

OR10S1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	10,509,352 - 10,510,380 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	10,509,385 - 10,510,380 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	10,565,627 - 10,566,655 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	10,458,618 - 10,459,646 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	10,458,651 - 10,459,646 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	10,525,522 - 10,526,550 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	10,494,179 - 10,495,207 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	10,539,927 - 10,540,955 (+)	NCBI		UU_Cfam_GSD_1.0

LOC101964472
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	105,451,074 - 105,452,063 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936542	8,372,483 - 8,373,478 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936542	8,372,483 - 8,373,472 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LOC100512247
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	50,909,148 - 50,910,113 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	50,909,148 - 50,910,125 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	56,139,991 - 56,140,986 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_003819955	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_003819955 ⟹ XP_003820003

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	9	124,673,549 - 124,674,514 (-)	NCBI
NHGRI_mPanPan1	11	125,778,019 - 125,778,984 (-)	NCBI
Mhudiblu_PPA_v0	11	118,805,119 - 118,806,084 (-)	NCBI
PanPan1.1	11	122,722,014 - 122,722,979 (-)	NCBI

Sequence:

show sequence

ATGACTAGCCGCTCTGTGTGTGAGAAGATGACCATGACAACGGAGAACCCCAACCAGACTGTGGTGAGCCACTTCTTCCTGGAGGGTTTGAGGTACACAGCTAAACATCCTAGCCTCTTCTTCCTCCT
CTTCCTCCTCATCTACAGCATCACTGTGGCTGGGAATCTCCTCATCCTCCTAACTGTGGGCTCTGACTCTCACCTCAGCTTACCCATGTACCACTTCCTGGGGCACCTCTCCTTCCTGGATGCCTGTT
TGTCTACAGTGACAGTGCCCAAGGTCATGGCAGGCCTGCTGACTCTGGATGGGAAGGTGATCTCCTTTGAGGGCTGTGCCGTACAGCTTTATTGCTTCCACTTTCTGGCCAGCACTGAGTGCTTCCTG
TACACAGTCATGGCCTATGACCGCTATCTGGCTATCTGTCAACCCCTGCACTACCCAGTGGCCATGAACAGAAGGATGTGTGCAGAAATGGCTGGAATCACCTGGGCCATAGGTGCCACGCACGCTGC
AATCCACACCTCCCTCACCTTCCACCTGCTCTACTGTGGGCCTTGCCACATTGCCTACTTCTTCTGCGACATACCCCCTGTCCTAAAGCTCGCCTGTACAGACACCACCATTAATGAGCTAGTCATGC
TTGCCAGCATTGGCATCGTGGCTGCAGGCTGCCTCATCCTCATCGTTATTTCCTACATCTTCATCGTGGCAGCTGTGTTGTGCATCCGCACAGCCCAGGGCCGGCAGCGGGCCTTCTCCACCTGCACT
GCCCACCTCACTGGGGTGCTCCTGTACTACGTGCCACCTGTCTGTATCTACCTGCAGCCTCGCTCCAGTGAGGCAGGAGCTGGGGCCCCTGCTGTCTTCTACACAATCGTAACTCCAATGCTCAACCC
ATTCATTTACACTTTGCGGAACAAGGAGGTGAAGCATGCTCTGCAAAGGCTTTTGTGCAGCAGCTTCTGA

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Protein RefSeqs	XP_003820003	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_003820003 ⟸ XM_003819955

- Sequence:

show sequence

MTSRSVCEKMTMTTENPNQTVVSHFFLEGLRYTAKHPSLFFLLFLLIYSITVAGNLLILLTVGSDSHLSLPMYHFLGHLSFLDACLSTVTVPKVMAGLLTLDGKVISFEGCAVQLYCFHFLASTECFL
YTVMAYDRYLAICQPLHYPVAMNRRMCAEMAGITWAIGATHAAIHTSLTFHLLYCGPCHIAYFFCDIPPVLKLACTDTTINELVMLASIGIVAAGCLILIVISYIFIVAAVLCIRTAQGRQRAFSTCT
AHLTGVLLYYVPPVCIYLQPRSSEAGAGAPAVFYTIVTPMLNPFIYTLRNKEVKHALQRLLCSSF

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Database	Acc Id	Source(s)
NCBI Gene	LOC100970443	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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