LOC100973548 (olfactory receptor 51G2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: LOC100973548 (olfactory receptor 51G2) Pan paniscus
Analyze
Symbol: LOC100973548 (Ensembl: OR51G2)
Name: olfactory receptor 51G2 (Ensembl:olfactory receptor family 51 subfamily G member 2)
RGD ID: 11739684
Description: ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); ASSOCIATED WITH delta beta-thalassemia (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v297,367,719 - 7,374,479 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1117,324,422 - 7,331,182 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0115,082,659 - 5,083,817 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1114,747,778 - 4,748,788 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl114,747,821 - 4,748,765 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC100973548
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v297,367,719 - 7,374,479 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1117,324,422 - 7,331,182 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0115,082,659 - 5,083,817 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1114,747,778 - 4,748,788 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl114,747,821 - 4,748,765 (-)Ensemblpanpan1.1panPan2
OR51G2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38114,912,588 - 4,919,350 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl114,912,588 - 4,919,350 (-)EnsemblGRCh38hg38GRCh38
GRCh37114,933,818 - 4,940,580 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36114,892,525 - 4,893,469 (-)NCBINCBI36Build 36hg18NCBI36
Build 34114,892,524 - 4,893,469NCBI
Celera115,059,757 - 5,060,701 (-)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef114,594,576 - 4,595,520 (-)NCBIHuRef
CHM1_1114,935,536 - 4,936,480 (-)NCBICHM1_1
T2T-CHM13v2.0114,978,116 - 4,984,880 (-)NCBIT2T-CHM13v2.0
Or51g2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397102,622,259 - 102,623,197 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7102,620,387 - 102,625,150 (-)EnsemblGRCm39 Ensembl
GRCm387102,973,052 - 102,973,990 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7102,971,180 - 102,975,943 (-)EnsemblGRCm38mm10GRCm38
MGSCv377110,121,566 - 110,122,504 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367102,846,873 - 102,847,811 (-)NCBIMGSCv36mm8
Celera7103,330,688 - 103,331,626 (-)NCBICelera
Cytogenetic Map7E3NCBI
cM Map754.85NCBI
Or51g2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81166,833,547 - 166,834,485 (-)NCBIGRCr8
mRatBN7.21157,421,637 - 157,422,575 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1157,421,637 - 157,422,575 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1165,389,119 - 165,390,057 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01172,569,220 - 172,570,158 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01165,478,975 - 165,479,913 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01168,143,384 - 168,144,322 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1168,142,529 - 168,144,280 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01174,317,933 - 174,318,871 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41160,772,197 - 160,773,135 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11160,851,213 - 160,852,152 (-)NCBI
Celera1155,468,236 - 155,469,174 (-)NCBICelera
Cytogenetic Map1q32NCBI
LOC102020652
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541420,518,042 - 20,518,983 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541420,518,042 - 20,518,983 (-)NCBIChiLan1.0ChiLan1.0
OR51G2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12127,360,385 - 27,372,543 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2127,360,385 - 27,361,326 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2127,119,982 - 27,120,923 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02127,980,913 - 27,981,726 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12127,394,814 - 27,395,755 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02127,664,654 - 27,665,595 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02127,721,548 - 27,722,489 (-)NCBIUU_Cfam_GSD_1.0
LOC101977911
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494758,609,882 - 58,610,866 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936498209,437 - 210,375 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936498209,418 - 210,402 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100737900
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl95,217,183 - 5,223,159 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.195,216,154 - 5,223,998 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.295,852,042 - 5,852,983 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103247927
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1161,884,495 - 61,886,277 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604364,063,256 - 64,064,264 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101714021
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248176,185,292 - 6,186,233 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248176,185,292 - 6,186,233 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_057299069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000026904   ⟹   ENSPPAP00000006121
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl114,747,821 - 4,748,765 (-)Ensembl
RefSeq Acc Id: XM_057299069   ⟹   XP_057155052
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v297,367,719 - 7,374,479 (-)NCBI
NHGRI_mPanPan1117,324,422 - 7,331,182 (-)NCBI
Protein Sequences
Protein RefSeqs XP_057155052 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000006121.1
Ensembl Acc Id: ENSPPAP00000006121   ⟸   ENSPPAT00000026904
RefSeq Acc Id: XP_057155052   ⟸   XM_057299069
- UniProtKB: A0A2R8ZQ42 (UniProtKB/TrEMBL)
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000024413 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000026904.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
  Olfactory_rcpt UniProtKB/TrEMBL
NCBI Gene LOC100973548 ENTREZGENE
PANTHER OLFACTORY RECEPTOR 51G2 UniProtKB/TrEMBL
  OLFACTORY RECEPTOR 56B1-RELATED UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A2R8ZQ42 ENTREZGENE, UniProtKB/TrEMBL