ATP13A5 (ATPase 13A5) - Rat Genome Database

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Gene: ATP13A5 (ATPase 13A5) Pan paniscus
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Symbol: ATP13A5
Name: ATPase 13A5
RGD ID: 11695995
Description: ENCODES a protein that exhibits ATP binding (inferred); ATP hydrolysis activity (inferred); ATPase-coupled monoatomic cation transmembrane transporter activity (inferred); INVOLVED IN intracellular calcium ion homeostasis (inferred); monoatomic cation transmembrane transport (inferred); polyamine transmembrane transport (inferred); ASSOCIATED WITH schizophrenia (ortholog); FOUND IN late endosome membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: probable cation-transporting ATPase 13A5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22191,192,018 - 191,300,494 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13191,196,739 - 191,305,215 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03190,570,844 - 190,675,257 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13200,888,795 - 200,993,217 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3200,889,048 - 200,978,713 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ATP13A5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22191,192,018 - 191,300,494 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13191,196,739 - 191,305,215 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03190,570,844 - 190,675,257 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13200,888,795 - 200,993,217 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3200,889,048 - 200,978,713 (-)Ensemblpanpan1.1panPan2
ATP13A5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383193,274,789 - 193,378,753 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3193,274,789 - 193,378,820 (-)EnsemblGRCh38hg38GRCh38
GRCh373192,992,578 - 193,096,542 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363194,475,525 - 194,579,208 (-)NCBINCBI36Build 36hg18NCBI36
Build 34MT8,479 - 9,206NCBI
Celera3191,408,105 - 191,511,656 (-)NCBICelera
Cytogenetic Map3q29NCBI
HuRef3190,379,964 - 190,483,725 (-)NCBIHuRef
CHM1_13192,955,701 - 193,059,389 (-)NCBICHM1_1
T2T-CHM13v2.03195,970,174 - 196,074,132 (-)NCBIT2T-CHM13v2.0
Atp13a5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391629,049,242 - 29,208,807 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1629,050,603 - 29,197,550 (-)EnsemblGRCm39 Ensembl
GRCm381629,230,490 - 29,378,766 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1629,231,851 - 29,378,732 (-)EnsemblGRCm38mm10GRCm38
MGSCv371629,232,000 - 29,378,818 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361629,151,885 - 29,298,479 (-)NCBIMGSCv36mm8
Celera1629,744,008 - 29,891,164 (-)NCBICelera
Cytogenetic Map16B2NCBI
cM Map1620.03NCBI
Atp13a5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81184,881,196 - 85,020,597 (+)NCBIGRCr8
mRatBN7.21171,376,388 - 71,515,789 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1171,376,422 - 71,515,789 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1180,221,615 - 80,361,226 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01172,856,573 - 72,996,189 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01171,911,008 - 72,050,519 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01174,984,538 - 75,124,249 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1174,984,613 - 75,124,249 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01178,029,982 - 78,168,702 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41173,267,689 - 73,418,786 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11173,325,397 - 73,475,692 (+)NCBI
Celera1170,339,871 - 70,477,936 (+)NCBICelera
Cytogenetic Map11q22NCBI
Atp13a5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542015,200,114 - 15,303,906 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542015,200,164 - 15,303,906 (+)NCBIChiLan1.0ChiLan1.0
ATP13A5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13424,773,486 - 24,879,022 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3424,774,273 - 24,879,147 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3428,863,491 - 28,969,291 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03424,721,880 - 24,828,014 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3424,722,517 - 24,827,951 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13424,753,697 - 24,859,453 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03424,723,221 - 24,829,318 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03424,964,510 - 25,070,390 (-)NCBIUU_Cfam_GSD_1.0
Atp13a5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602122,848,497 - 122,962,851 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367111,294,892 - 1,402,793 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367111,294,974 - 1,402,797 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP13A5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13130,306,570 - 130,420,554 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113130,306,682 - 130,420,542 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213139,829,138 - 139,942,972 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP13A5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11587,357,162 - 87,472,677 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1587,357,409 - 87,451,393 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604161,023,319 - 61,138,613 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp13a5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473064,177,053 - 64,279,732 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473064,177,043 - 64,279,833 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003807659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000039030   ⟹   ENSPPAP00000016335
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl3200,889,048 - 200,978,713 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000039034   ⟹   ENSPPAP00000016339
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl3200,889,048 - 200,927,357 (-)Ensembl
RefSeq Acc Id: XM_003807659   ⟹   XP_003807707
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22191,192,018 - 191,300,494 (-)NCBI
NHGRI_mPanPan13191,196,739 - 191,305,215 (-)NCBI
Mhudiblu_PPA_v03190,570,844 - 190,675,257 (-)NCBI
PanPan1.13200,888,795 - 200,993,217 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003807707 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000016335.1
  ENSPPAP00000016339.1
RefSeq Acc Id: XP_003807707   ⟸   XM_003807659
- UniProtKB: A0A2R9AL07 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000016339   ⟸   ENSPPAT00000039034
Ensembl Acc Id: ENSPPAP00000016335   ⟸   ENSPPAT00000039030
Protein Domains
P5B-type ATPase N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000031276 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000039030.1 UniProtKB/TrEMBL
  ENSPPAT00000039034.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.1110.10 UniProtKB/TrEMBL
  3.40.50.1000 UniProtKB/TrEMBL
  Calcium-transporting ATPase, cytoplasmic transduction domain A UniProtKB/TrEMBL
  Calcium-transporting ATPase, transmembrane domain UniProtKB/TrEMBL
InterPro ATPase_P-typ_cyto_dom_N UniProtKB/TrEMBL
  ATPase_P-typ_P_site UniProtKB/TrEMBL
  ATPase_P-typ_TM_dom_sf UniProtKB/TrEMBL
  ATPase_P-typ_transduc_dom_A_sf UniProtKB/TrEMBL
  HAD-like_sf UniProtKB/TrEMBL
  HAD_sf UniProtKB/TrEMBL
  P-type_TPase_V UniProtKB/TrEMBL
  P5A-ATPase_N UniProtKB/TrEMBL
  P5B-type_ATPase UniProtKB/TrEMBL
  P_typ_ATPase UniProtKB/TrEMBL
  P_typ_ATPase_HD_dom UniProtKB/TrEMBL
NCBI Gene ATP13A5 ENTREZGENE
PANTHER CATION-TRANSPORTING ATPASE 13A5-RELATED UniProtKB/TrEMBL
  CATION-TRANSPORTING ATPASE-RELATED UniProtKB/TrEMBL
Pfam Cation_ATPase UniProtKB/TrEMBL
  E1-E2_ATPase UniProtKB/TrEMBL
  P5-ATPase UniProtKB/TrEMBL
PRINTS CATATPASE UniProtKB/TrEMBL
  NAKATPASE UniProtKB/TrEMBL
PROSITE ATPASE_E1_E2 UniProtKB/TrEMBL
Superfamily-SCOP SSF56784 UniProtKB/TrEMBL
  SSF81653 UniProtKB/TrEMBL
  SSF81660 UniProtKB/TrEMBL
  SSF81665 UniProtKB/TrEMBL
UniProt A0A2R9AL07 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AN04_PANPA UniProtKB/TrEMBL