Atp13a5 (ATPase 13A5) - Rat Genome Database

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Gene: Atp13a5 (ATPase 13A5) Ictidomys tridecemlineatus
Analyze
Symbol: Atp13a5
Name: ATPase 13A5
RGD ID: 12504106
Description: ENCODES a protein that exhibits ATP binding (inferred); ATP hydrolysis activity (inferred); ATP-dependent H2AZ histone chaperone activity (inferred); INVOLVED IN chromatin looping (inferred); chromatin remodeling (inferred); intracellular calcium ion homeostasis (inferred); ASSOCIATED WITH schizophrenia (ortholog); FOUND IN late endosome membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: probable cation-transporting ATPase 13A5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602122,848,497 - 122,962,851 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367111,294,892 - 1,402,793 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367111,294,974 - 1,402,797 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Atp13a5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602122,848,497 - 122,962,851 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367111,294,892 - 1,402,793 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367111,294,974 - 1,402,797 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP13A5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383193,274,789 - 193,378,753 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3193,274,789 - 193,378,820 (-)EnsemblGRCh38hg38GRCh38
GRCh373192,992,578 - 193,096,542 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363194,475,525 - 194,579,208 (-)NCBINCBI36Build 36hg18NCBI36
Build 34MT8,479 - 9,206NCBI
Celera3191,408,105 - 191,511,656 (-)NCBICelera
Cytogenetic Map3q29NCBI
HuRef3190,379,964 - 190,483,725 (-)NCBIHuRef
CHM1_13192,955,701 - 193,059,389 (-)NCBICHM1_1
T2T-CHM13v2.03195,970,174 - 196,074,132 (-)NCBIT2T-CHM13v2.0
Atp13a5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391629,049,242 - 29,208,807 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1629,050,603 - 29,197,550 (-)EnsemblGRCm39 Ensembl
GRCm381629,230,490 - 29,378,766 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1629,231,851 - 29,378,732 (-)EnsemblGRCm38mm10GRCm38
MGSCv371629,232,000 - 29,378,818 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361629,151,885 - 29,298,479 (-)NCBIMGSCv36mm8
Celera1629,744,008 - 29,891,164 (-)NCBICelera
Cytogenetic Map16B2NCBI
cM Map1620.03NCBI
Atp13a5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81184,881,196 - 85,020,597 (+)NCBIGRCr8
mRatBN7.21171,376,388 - 71,515,789 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1171,376,422 - 71,515,789 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1180,221,615 - 80,361,226 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01172,856,573 - 72,996,189 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01171,911,008 - 72,050,519 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01174,984,538 - 75,124,249 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1174,984,613 - 75,124,249 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01178,029,982 - 78,168,702 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41173,267,689 - 73,418,786 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11173,325,397 - 73,475,692 (+)NCBI
Celera1170,339,871 - 70,477,936 (+)NCBICelera
Cytogenetic Map11q22NCBI
Atp13a5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542015,200,114 - 15,303,906 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542015,200,164 - 15,303,906 (+)NCBIChiLan1.0ChiLan1.0
ATP13A5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22191,192,018 - 191,300,494 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13191,196,739 - 191,305,215 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03190,570,844 - 190,675,257 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13200,888,795 - 200,993,217 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3200,889,048 - 200,978,713 (-)Ensemblpanpan1.1panPan2
ATP13A5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13424,773,486 - 24,879,022 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3424,774,273 - 24,879,147 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3428,863,491 - 28,969,291 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03424,721,880 - 24,828,014 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3424,722,517 - 24,827,951 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13424,753,697 - 24,859,453 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03424,723,221 - 24,829,318 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03424,964,510 - 25,070,390 (-)NCBIUU_Cfam_GSD_1.0
ATP13A5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13130,306,570 - 130,420,554 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113130,306,682 - 130,420,542 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213139,829,138 - 139,942,972 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP13A5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11587,357,162 - 87,472,677 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1587,357,409 - 87,451,393 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604161,023,319 - 61,138,613 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp13a5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473064,177,053 - 64,279,732 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473064,177,043 - 64,279,833 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000008549   ⟹   ENSSTOP00000007663
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367111,295,064 - 1,400,499 (+)Ensembl
Ensembl Acc Id: ENSSTOT00000042159   ⟹   ENSSTOP00000028738
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367111,294,892 - 1,402,793 (+)Ensembl
RefSeq Acc Id: XM_005338418   ⟹   XP_005338475
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405602122,848,497 - 122,955,438 (-)NCBI
SpeTri2.0NW_0049367111,294,974 - 1,402,797 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040270214   ⟹   XP_040126148
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405602122,848,497 - 122,956,359 (-)NCBI
RefSeq Acc Id: XM_040270215   ⟹   XP_040126149
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405602122,848,497 - 122,962,851 (-)NCBI
RefSeq Acc Id: XM_040270216   ⟹   XP_040126150
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405602122,848,497 - 122,955,437 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005338475 (Get FASTA)   NCBI Sequence Viewer  
  XP_040126148 (Get FASTA)   NCBI Sequence Viewer  
  XP_040126149 (Get FASTA)   NCBI Sequence Viewer  
  XP_040126150 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000007663.3
  ENSSTOP00000028738.1
GenBank Protein KAG3271224 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005338475   ⟸   XM_005338418
- Peptide Label: isoform X1
- UniProtKB: A0A287D5B5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040126149   ⟸   XM_040270215
- Peptide Label: isoform X1
- UniProtKB: A0A287D5B5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040126148   ⟸   XM_040270214
- Peptide Label: isoform X1
- UniProtKB: A0A287D5B5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040126150   ⟸   XM_040270216
- Peptide Label: isoform X2
- UniProtKB: I3MBU0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000007663   ⟸   ENSSTOT00000008549
Ensembl Acc Id: ENSSTOP00000028738   ⟸   ENSSTOT00000042159
Protein Domains
Cation-transporting P-type ATPase N-terminal   P5B-type ATPase N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000008512 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000008549.3 UniProtKB/TrEMBL
  ENSSTOT00000042159.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.1110.10 UniProtKB/TrEMBL
  3.40.50.1000 UniProtKB/TrEMBL
  Calcium-transporting ATPase, cytoplasmic transduction domain A UniProtKB/TrEMBL
  Calcium-transporting ATPase, transmembrane domain UniProtKB/TrEMBL
InterPro ATPase_P-typ_cation-transptr_N UniProtKB/TrEMBL
  ATPase_P-typ_cyto_dom_N UniProtKB/TrEMBL
  ATPase_P-typ_P_site UniProtKB/TrEMBL
  ATPase_P-typ_TM_dom_sf UniProtKB/TrEMBL
  ATPase_P-typ_transduc_dom_A_sf UniProtKB/TrEMBL
  HAD-like_sf UniProtKB/TrEMBL
  HAD_sf UniProtKB/TrEMBL
  P-type_TPase_V UniProtKB/TrEMBL
  P5A-ATPase_N UniProtKB/TrEMBL
  P5B-type_ATPase UniProtKB/TrEMBL
  P_typ_ATPase UniProtKB/TrEMBL
  P_typ_ATPase_HD_dom UniProtKB/TrEMBL
NCBI Gene Atp13a5 ENTREZGENE
PANTHER CATION-TRANSPORTING ATPASE 13A5-RELATED UniProtKB/TrEMBL
  CATION-TRANSPORTING ATPASE-RELATED UniProtKB/TrEMBL
Pfam Cation_ATPase UniProtKB/TrEMBL
  Cation_ATPase_N UniProtKB/TrEMBL
  E1-E2_ATPase UniProtKB/TrEMBL
  P5-ATPase UniProtKB/TrEMBL
PRINTS CATATPASE UniProtKB/TrEMBL
  NAKATPASE UniProtKB/TrEMBL
PROSITE ATPASE_E1_E2 UniProtKB/TrEMBL
Superfamily-SCOP SSF56784 UniProtKB/TrEMBL
  SSF81653 UniProtKB/TrEMBL
  SSF81660 UniProtKB/TrEMBL
  SSF81665 UniProtKB/TrEMBL
UniProt A0A287D5B5 ENTREZGENE, UniProtKB/TrEMBL
  I3MBU0 ENTREZGENE, UniProtKB/TrEMBL