MS4A6A (membrane spanning 4-domains A6A) - Rat Genome Database

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Gene: MS4A6A (membrane spanning 4-domains A6A) Pan paniscus
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Symbol: MS4A6A
Name: membrane spanning 4-domains A6A
RGD ID: 11695004
Description: INVOLVED IN cell surface receptor signaling pathway (inferred); ASSOCIATED WITH diastolic heart failure (ortholog); IgA glomerulonephritis (ortholog); intellectual disability (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred); trans-Golgi network (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: membrane-spanning 4-domains subfamily A member 6A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2961,308,040 - 61,319,792 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11162,352,107 - 62,363,863 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01155,402,207 - 55,413,959 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11158,848,268 - 58,860,947 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1158,847,867 - 58,860,947 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
MS4A6A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2961,308,040 - 61,319,792 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11162,352,107 - 62,363,863 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01155,402,207 - 55,413,959 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11158,848,268 - 58,860,947 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1158,847,867 - 58,860,947 (-)Ensemblpanpan1.1panPan2
MS4A6A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381160,171,607 - 60,184,666 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1160,171,607 - 60,184,666 (-)EnsemblGRCh38hg38GRCh38
GRCh371159,939,080 - 59,952,139 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361159,695,656 - 59,707,250 (-)NCBINCBI36Build 36hg18NCBI36
Build 341159,695,656 - 59,707,250NCBI
Celera1157,303,467 - 57,315,061 (-)NCBICelera
Cytogenetic Map11q12.2NCBI
HuRef1156,286,236 - 56,299,295 (-)NCBIHuRef
CHM1_11159,805,070 - 59,818,129 (-)NCBICHM1_1
T2T-CHM13v2.01160,122,891 - 60,135,951 (-)NCBIT2T-CHM13v2.0
Ms4a6c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391911,446,718 - 11,464,433 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1911,446,730 - 11,459,556 (+)EnsemblGRCm39 Ensembl
GRCm381911,469,353 - 11,487,182 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1911,469,366 - 11,482,192 (+)EnsemblGRCm38mm10GRCm38
MGSCv371911,543,858 - 11,556,687 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361911,536,438 - 11,548,371 (+)NCBIMGSCv36mm8
Celera1912,142,035 - 12,154,876 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map198.44NCBI
Ms4a6a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81217,826,261 - 217,839,606 (-)NCBIGRCr8
mRatBN7.21208,401,465 - 208,414,831 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1208,401,466 - 208,414,758 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01227,919,284 - 227,932,637 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1227,919,301 - 227,932,603 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01234,981,705 - 234,995,014 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41214,046,885 - 214,057,578 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11214,203,821 - 214,216,008 (+)NCBI
Celera1205,877,402 - 205,890,755 (-)NCBICelera
Cytogenetic Map1q43NCBI
Ms4a6a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555114,521,602 - 4,529,712 (-)NCBIChiLan1.0ChiLan1.0
LOC612553
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12150,569,747 - 50,579,721 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2150,010,405 - 50,020,600 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02151,743,167 - 51,753,362 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12150,789,895 - 50,800,098 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02150,887,869 - 50,898,062 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02151,512,588 - 51,522,799 (-)NCBIUU_Cfam_GSD_1.0
LOC100524972
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1211,373,408 - 11,383,704 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2210,932,505 - 10,942,827 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103234769
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1113,619,459 - 13,631,727 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl113,619,567 - 13,631,583 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038110,956,405 - 110,969,171 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000031011   ⟹   ENSPPAP00000008375
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1158,847,867 - 58,860,947 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000031013   ⟹   ENSPPAP00000008377
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1158,849,295 - 58,858,010 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000031015   ⟹   ENSPPAP00000008379
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1158,855,976 - 58,858,010 (-)Ensembl
RefSeq Acc Id: XM_034932699   ⟹   XP_034788590
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2961,308,040 - 61,319,792 (-)NCBI
NHGRI_mPanPan11162,352,107 - 62,363,863 (-)NCBI
Mhudiblu_PPA_v01155,402,609 - 55,413,959 (-)NCBI
RefSeq Acc Id: XM_034932701   ⟹   XP_034788592
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2961,308,040 - 61,319,739 (-)NCBI
NHGRI_mPanPan11162,352,107 - 62,363,812 (-)NCBI
Mhudiblu_PPA_v01155,402,630 - 55,413,925 (-)NCBI
RefSeq Acc Id: XM_034932702   ⟹   XP_034788593
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2961,308,040 - 61,319,743 (-)NCBI
NHGRI_mPanPan11162,352,107 - 62,363,816 (-)NCBI
Mhudiblu_PPA_v01155,402,217 - 55,413,950 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034788590 (Get FASTA)   NCBI Sequence Viewer  
  XP_034788592 (Get FASTA)   NCBI Sequence Viewer  
  XP_034788593 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000008375.1
  ENSPPAP00000008377.1
  ENSPPAP00000008379.1
RefSeq Acc Id: XP_034788593   ⟸   XM_034932702
- Peptide Label: isoform X3
RefSeq Acc Id: XP_034788590   ⟸   XM_034932699
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZTT1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034788592   ⟸   XM_034932701
- Peptide Label: isoform X2
- UniProtKB: A0A2R8ZTT1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000008379   ⟸   ENSPPAT00000031015
Ensembl Acc Id: ENSPPAP00000008377   ⟸   ENSPPAT00000031013
Ensembl Acc Id: ENSPPAP00000008375   ⟸   ENSPPAT00000031011


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000027423 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000031011.1 UniProtKB/TrEMBL
  ENSPPAT00000031013.1 UniProtKB/TrEMBL
  ENSPPAT00000031015.1 UniProtKB/TrEMBL
InterPro CD20-like UniProtKB/TrEMBL
  MS4A UniProtKB/TrEMBL
NCBI Gene MS4A6A ENTREZGENE
PANTHER PTHR23320 UniProtKB/TrEMBL
  PTHR23320:SF135 UniProtKB/TrEMBL
Pfam CD20 UniProtKB/TrEMBL
UniProt A0A2R8ZTS9_PANPA UniProtKB/TrEMBL
  A0A2R8ZTT1 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZX70_PANPA UniProtKB/TrEMBL