LOC100994982 (uncharacterized LOC100994982) - Rat Genome Database

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Gene: LOC100994982 (uncharacterized LOC100994982) Pan paniscus
Analyze
Symbol: LOC100994982
Name: uncharacterized LOC100994982
RGD ID: 11685378
Description: ASSOCIATED WITH developmental and epileptic encephalopathy (ortholog); dystonia (ortholog); early infantile epileptic encephalopathy (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C9H9orf50; chromosome 9 C9orf50 homolog; chromosome 9 open reading frame, human C9orf50; uncharacterized protein C9orf50 homolog; uncharacterized protein LOC100994982
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2119,732,996 - 9,739,517 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan199,731,940 - 9,741,861 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09100,734,183 - 100,747,299 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19129,396,514 - 129,410,395 (-)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
LOC100994982
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2119,732,996 - 9,739,517 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan199,731,940 - 9,741,861 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09100,734,183 - 100,747,299 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19129,396,514 - 129,410,395 (-)NCBIpanpan1.1PanPan1.1panPan2
C9orf50
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389129,612,225 - 129,621,924 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9129,612,225 - 129,621,101 (-)EnsemblGRCh38hg38GRCh38
GRCh379132,374,504 - 132,383,380 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369131,414,325 - 131,422,876 (-)NCBINCBI36Build 36hg18NCBI36
Celera9103,025,311 - 103,033,860 (-)NCBICelera
Cytogenetic Map9q34.11NCBI
HuRef9101,973,658 - 101,982,115 (-)NCBIHuRef
CHM1_19132,523,217 - 132,531,768 (-)NCBICHM1_1
T2T-CHM13v2.09141,816,825 - 141,826,511 (-)NCBIT2T-CHM13v2.0
1700001O22Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39230,685,575 - 30,695,101 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl230,684,781 - 30,693,673 (-)EnsemblGRCm39 Ensembl
GRCm38230,795,563 - 30,803,729 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl230,794,769 - 30,803,661 (-)EnsemblGRCm38mm10GRCm38
MGSCv37230,651,087 - 30,659,177 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36230,617,572 - 30,623,716 (-)NCBIMGSCv36mm8
Celera230,499,670 - 30,507,762 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map221.74NCBI
C3h9orf50
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8334,477,535 - 34,484,791 (-)NCBIGRCr8
mRatBN7.2314,076,679 - 14,087,036 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl314,080,744 - 14,086,978 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx317,153,159 - 17,159,356 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0325,738,150 - 25,744,347 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0323,985,512 - 23,991,717 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.039,629,823 - 9,636,137 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl39,629,842 - 9,636,058 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0314,989,182 - 14,995,424 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.439,847,318 - 9,853,535 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.139,742,670 - 9,748,902 (-)NCBI
Celera38,841,088 - 8,847,305 (-)NCBICelera
Cytogenetic Map3p12NCBI
CUNH9orf50
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555701,731,774 - 1,737,757 (-)NCBIChiLan1.0ChiLan1.0
C9H9orf50
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1954,175,921 - 54,183,333 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl954,176,106 - 54,183,239 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha953,371,826 - 53,379,250 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0955,071,372 - 55,078,770 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl955,071,563 - 55,078,677 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1953,849,920 - 53,857,327 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0954,169,944 - 54,177,354 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0954,263,375 - 54,270,772 (+)NCBIUU_Cfam_GSD_1.0
CUNH9orf50
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947197,110,037 - 197,117,583 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493648716,878,595 - 16,884,583 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C1H9orf50
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11269,808,945 - 269,824,645 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21303,802,932 - 303,807,675 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH9orf50
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1128,522,444 - 8,533,375 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl128,525,755 - 8,533,239 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660796,905,338 - 6,913,727 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH9orf50
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247605,715,984 - 5,721,324 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_063594366   ⟹   XP_063450436
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2119,732,996 - 9,739,517 (+)NCBI
Protein Sequences
Protein RefSeqs XP_063450436 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000031807.1
RefSeq Acc Id: XP_063450436   ⟸   XM_063594366
Protein Domains
DUF4685


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000038811 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000054671.1 UniProtKB/TrEMBL
InterPro DUF4685 UniProtKB/TrEMBL
NCBI Gene C9H9orf50 ENTREZGENE
PANTHER RIKEN CDNA 1700001O22 GENE UniProtKB/TrEMBL
  RIKEN CDNA 1700001O22 GENE UniProtKB/TrEMBL
Pfam DUF4685 UniProtKB/TrEMBL
UniProt A0A2R9BQ73_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-03-13 LOC100994982  uncharacterized LOC100994982  C9H9orf50  chromosome 9 C9orf50 homolog  Symbol and/or name change 5135510 APPROVED
2018-05-08 C9H9orf50  chromosome 9 C9orf50 homolog    chromosome 9 open reading frame, human C9orf50  Symbol and/or name change 5135510 APPROVED