LOC100971080 (olfactory receptor 5F1)

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Gene: LOC100971080 (olfactory receptor 5F1) Pan paniscus

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Symbol:

LOC100971080

Name:

olfactory receptor 5F1

RGD ID:

11672198

Description:

ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

olfactory receptor 5F1-like

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	57,145,371 - 57,146,686 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	58,161,060 - 58,162,375 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	51,228,713 - 51,230,028 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

intellectual disability (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

detection of chemical stimulus involved in sensory perception of smell (IEA)

G protein-coupled receptor signaling pathway (IEA)

sensory perception of smell (IEA)

Cellular Component

membrane (IEA)

plasma membrane (IEA)

Molecular Function

G protein-coupled receptor activity (IEA)

olfactory receptor activity (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

LOC100971080
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	57,145,371 - 57,146,686 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	58,161,060 - 58,162,375 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	51,228,713 - 51,230,028 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

OR5F1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	55,993,681 - 55,994,625 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	55,993,681 - 55,994,625 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	55,761,157 - 55,762,101 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	55,517,733 - 55,518,677 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	55,517,732 - 55,518,677	NCBI
Celera	11	53,101,323 - 53,102,267 (-)	NCBI		Celera
Cytogenetic Map	11	q12.1	NCBI
HuRef	11	52,090,146 - 52,091,090 (-)	NCBI		HuRef
CHM1_1	11	55,626,695 - 55,627,639 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	55,932,011 - 55,932,955 (-)	NCBI		T2T-CHM13v2.0

Or8h7
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	86,720,570 - 86,722,507 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	86,717,117 - 86,722,560 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	86,890,226 - 86,892,163 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	86,886,773 - 86,892,216 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	86,730,383 - 86,732,320 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	86,691,065 - 86,692,012 (-)	NCBI		MGSCv36	mm8
Celera	2	88,480,047 - 88,481,985 (-)	NCBI		Celera
Cytogenetic Map	2	D	NCBI
cM Map	2	49.86	NCBI

OR5F2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	39,846,318 - 39,847,289 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	39,846,318 - 39,847,289 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	39,371,109 - 39,371,952 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	40,535,873 - 40,536,716 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	40,535,873 - 40,536,844 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	40,146,289 - 40,147,132 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	39,708,428 - 39,709,271 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	40,294,937 - 40,295,780 (+)	NCBI		UU_Cfam_GSD_1.0

LOC100513907
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa10.2	1	312,309,919 - 312,310,863 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008964093	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_008964093 ⟹ XP_008962341

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	9	57,145,371 - 57,146,686 (-)	NCBI
NHGRI_mPanPan1	11	58,161,060 - 58,162,375 (-)	NCBI
Mhudiblu_PPA_v0	11	51,228,713 - 51,230,028 (-)	NCBI

Sequence:

show sequence

ATGACCAGAAAAAATTATACCTCACTGACTGAGTTCGTCCTATTGGGATTAGCAGACACGCTGG
AGCTACAGATTATCCTCTTTTTGTTTTTTCTTGTGATTTATACACTTACAGTACTGGGAAATCT
CGGGATGATCCTCTTAATCAGGATCGATTCCCAGCTTCACACACCCATGTATTTCTTCCTGGCT
AACCTGTCCTTTGTGGACGTTTGTTACTCAACCACCATCACCCCAAAGATGCTGGCAGATTTAT
TATCAGAGAAGAAAACCATCTCTTTTGCTGGCTGCTTCCTACAGATGTACTTCTTTATCGCCCT
GGCAACAACCGAATGCATCCTCTTTGGGTTAATGGCCTATGACCGGTATGTGGCCATATGTCGC
CCGCTGCTTTACTCCTTGATCATGTCCAGGACCGTCTGCCTAAAAATGGCAGCCGGGGCTTTTG
CTGCAGAGTTGCTGAACTCCATGGTCAACACTAGCTATGTCAGCAGCTTGTCATTCTGTGGCTC
CAATGTCATCCATCACTTCTTCTGCGACNAGCCCCCACTTTTCAAGCTCTCTTGTTCTGACACA
ATCCTGAAAGAAAGCATAAGTTCTATTTTGGCTGGTGTGAATATTGTGGGGACTTTGCTTGTCA
TCCTCTCCTCCTACTCCTACATTCTCTTCTCCATTTTTTCTATGCATTCAGGGGAGGGGAGGCA
CAGAGCTTTCTCCACGTATGCCTCTCACCTGACAGCCATAATTCTGTTCTATGCCACCTGCATC
TATACTTACCTGAGACCTAGTTCCAGCTACTCCCTGAATCAGGACAAAGTGGCTTCTGTGTTCT
ACACAGTGGTGATCCCCATGTTGAATCCTCTGATCTACAGCCTCAGGAATGAGGAAGTAAAGAA
GGCTTTAGCGAATGTAATTAGCAGGAAAAGGATCTCTTCCTTTCTGTGA

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Protein Sequences


Protein RefSeqs	XP_008962341	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_008962341 ⟸ XM_008964093

- UniProtKB:

A0A2R9AML4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTRKNYTSLTEFVLLGLADTLELQIILFLFFLVIYTLTVLGNLGMILLIRIDSQLHTPMYFFLA
NLSFVDVCYSTTITPKMLADLLSEKKTISFAGCFLQMYFFIALATTECILFGLMAYDRYVAICR
PLLYSLIMSRTVCLKMAAGAFAAELLNSMVNTSYVSSLSFCGSNVIHHFFCDXPPLFKLSCSDT
ILKESISSILAGVNIVGTLLVILSSYSYILFSIFSMHSGEGRHRAFSTYASHLTAIILFYATCI
YTYLRPSSSYSLNQDKVASVFYTVVIPMLNPLIYSLRNEEVKKALANVISRKRISSFL

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Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	LOC100971080	ENTREZGENE
UniProt	A0A2R9AML4	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2020-07-01	LOC100971080	olfactory receptor 5F1	LOC100971080	olfactory receptor 5F1-like	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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