Gene: LINC01725 (long intergenic non-protein coding RNA 1725) Homo sapiens
Analyze
Symbol:
LINC01725
Name:
long intergenic non-protein coding RNA 1725
RGD ID:
11563594
Description:
Type:
ncrna (Ensembl: lncRNA)
RefSeq Status:
VALIDATED
Allele / Splice:
See ClinVar data
Latest Assembly:
GRCh38 - Human Genome Assembly GRCh38
Position:
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 1 83,801,516 - 83,860,546 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 1 83,575,776 - 83,861,053 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 1 84,267,199 - 84,326,229 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Cytogenetic Map 1 p31.1 NCBI HuRef 1 82,384,301 - 82,443,167 (-) NCBI HuRef CHM1_1 1 84,381,857 - 84,440,965 (-) NCBI CHM1_1 T2T-CHM13v2.0 1 83,641,830 - 83,700,893 (-) NCBI T2T-CHM13v2.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
References
Additional References at PubMed
Genomics
miRNA Target Status
Predicted Target Of
Count of predictions: 463 Count of miRNA genes: 222 Interacting mature miRNAs: 227 Transcripts: ENST00000413975, ENST00000417565, ENST00000417975, ENST00000419733, ENST00000457273 Prediction methods: Miranda, Rnahybrid Result types: miRGate_prediction
Expression
RNA-SEQ Expression
High: > 1000 TPM valueMedium: Between 11 and 1000 TPMLow: Between 0.5 and 10 TPMBelow Cutoff: < 0.5 TPM
alimentary part of gastrointestinal system
circulatory system
endocrine system
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
adipose tissue
appendage
entire extraembryonic component
pharyngeal arch
High
Medium
1
1
1
1
Low
12
36
566
117
71
111
104
2
37
16
515
460
9
1
72
2
2
Below cutoff
1758
2373
1118
474
985
319
3390
1377
3211
343
786
982
163
1011
2104
3
Sequence
RefSeq Acc Id:
ENST00000413975
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 1 83,831,621 - 83,861,031 (-) Ensembl
RefSeq Acc Id:
ENST00000417565
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 1 83,831,621 - 83,860,943 (-) Ensembl
RefSeq Acc Id:
ENST00000417975
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 1 83,575,776 - 83,860,996 (-) Ensembl
RefSeq Acc Id:
ENST00000419733
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 1 83,831,621 - 83,861,023 (-) Ensembl
RefSeq Acc Id:
ENST00000457273
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 1 83,801,516 - 83,860,546 (-) Ensembl
RefSeq Acc Id:
ENST00000657125
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 1 83,842,497 - 83,861,016 (-) Ensembl
RefSeq Acc Id:
ENST00000662803
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 1 83,747,054 - 83,752,515 (-) Ensembl
RefSeq Acc Id:
ENST00000670031
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 1 83,745,318 - 83,861,024 (-) Ensembl
RefSeq Acc Id:
ENST00000685925
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 1 83,735,501 - 83,861,018 (-) Ensembl
RefSeq Acc Id:
ENST00000688380
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 1 83,747,383 - 83,861,038 (-) Ensembl
RefSeq Acc Id:
ENST00000688565
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 1 83,802,582 - 83,861,016 (-) Ensembl
RefSeq Acc Id:
ENST00000689046
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 1 83,746,147 - 83,861,053 (-) Ensembl
RefSeq Acc Id:
ENST00000689600
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 1 83,844,375 - 83,861,026 (-) Ensembl
RefSeq Acc Id:
ENST00000701060
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 1 83,735,501 - 83,861,038 (-) Ensembl
RefSeq Acc Id:
ENST00000701853
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 1 83,616,044 - 83,861,038 (-) Ensembl
RefSeq Acc Id:
ENST00000701862
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 1 83,616,053 - 83,860,992 (-) Ensembl
RefSeq Acc Id:
ENST00000702837
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 1 83,860,387 - 83,861,016 (-) Ensembl
RefSeq Acc Id:
ENST00000702881
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 1 83,735,501 - 83,861,038 (-) Ensembl
RefSeq Acc Id:
NR_119374
RefSeq Status:
VALIDATED
Type:
NON-CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38 1 83,801,516 - 83,860,546 (-) NCBI T2T-CHM13v2.0 1 83,641,830 - 83,700,893 (-) NCBI
Sequence:
ACCGTTGCTCAGAGTCCAGGCCGGTTAGGACCAGAGCCTACCCCGGGTGGCATGGTGATGATCC
hide sequence
Additional Information
