LOC108351291 (alpha-enolase pseudogene) - Rat Genome Database

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Gene: LOC108351291 (alpha-enolase pseudogene) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC108351291 (Ensembl: ENSRNOG00000070937)
Name: alpha-enolase pseudogene (Ensembl:alpha-enolase-like)
RGD ID: 11362626
Description: Predicted to enable magnesium ion binding activity and phosphopyruvate hydratase activity. Predicted to be involved in glycolytic process. Predicted to be part of phosphopyruvate hydratase complex.
Type: protein-coding (Ensembl: protein_coding)
RefSeq Status: MODEL
Previously known as: alpha-enolase-like
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.26122,171,317 - 122,172,034 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6122,171,327 - 122,171,932 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.06126,909,584 - 126,911,070 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Celera6119,656,225 - 119,657,711 (-)NCBICelera
Cytogenetic Map6q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Variants

.
Variants in LOC108351291
1 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)672202632130729475Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)672227641130729205Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat
738034Anxrr5Anxiety related response QTL 55.9exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)684130881129130881Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)685140138130140138Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)685140138130140138Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)685311061133478515Rat
1300076Glom8Glomerulus QTL 870.000000009kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)686894788131894788Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)688047916133047916Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)693701310128713626Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)694968928137848904Rat
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)694968928139968928Rat
8552796Vie3Viral induced encephalitis QTL 32.6brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)696833997140994061Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6100364669140994061Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6100671796132340886Rat
1331797Bp213Blood pressure QTL 2133.291arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)6104085867128713626Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6105156861140994061Rat
4145118Mcs26Mammary carcinoma susceptibility QTL 260.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6106752656132339866Rat
737976Pia24Pristane induced arthritis QTL 24joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)6112636280140994061Rat
1298087Iddm18Insulin dependent diabetes mellitus QTL 180.0001urine glucose amount (VT:0001758)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)6116506292130245370Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000100673   ⟹   ENSRNOP00000089196
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6122,171,327 - 122,171,932 (-)Ensembl
RefSeq Acc Id: XM_039113353   ⟹   XP_038969281
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26122,171,317 - 122,172,034 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038969281 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_038969281   ⟸   XM_039113353
RefSeq Acc Id: ENSRNOP00000089196   ⟸   ENSRNOT00000100673
Protein Domains
Enolase N-terminal

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-36428 BioCyc
Ensembl Genes ENSRNOG00000070937 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000089196.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000100673.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.390.10 UniProtKB/TrEMBL
InterPro Enolase UniProtKB/TrEMBL
  Enolase-like_N UniProtKB/TrEMBL
  Enolase_N UniProtKB/TrEMBL
NCBI Gene LOC108351291 ENTREZGENE
PANTHER ALPHA-ENOLASE UniProtKB/TrEMBL
  PTHR11902 UniProtKB/TrEMBL
Pfam Enolase_N UniProtKB/TrEMBL
PhenoGen LOC108351291 PhenoGen
SMART Enolase_N UniProtKB/TrEMBL
Superfamily-SCOP SSF54826 UniProtKB/TrEMBL
UniProt A0A8I6AB47_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-02 LOC108351291  alpha-enolase pseudogene      Symbol and Name status set to provisional 70820 PROVISIONAL