Trav4d-3 (T cell receptor alpha variable 4D-3) - Rat Genome Database

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Gene: Trav4d-3 (T cell receptor alpha variable 4D-3) Mus musculus
Analyze
Symbol: Trav4d-3
Name: T cell receptor alpha variable 4D-3
RGD ID: 11338784
MGI Page MGI
Description:
Type: gene (Ensembl: TR_V_gene)
RefSeq Status: VALIDATED
Previously known as: ENSMUSG00000076782; Gm10887; Gm31; Trav4-3
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391453,137,429 - 53,137,927 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1453,137,426 - 53,137,927 (+)EnsemblGRCm39 Ensembl
GRCm381452,899,972 - 52,900,470 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1452,899,969 - 52,900,470 (+)EnsemblGRCm38mm10GRCm38
MGSCv371453,519,647 - 53,520,145 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Cytogenetic Map14C2NCBI
cM Map1427.14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Trav4d-3Mousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Trav4d-3Mousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Trav4d-3Mousemolecular_function enablesND 2290270 MGIGO_REF:0000015

PMID:15608191  



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Variants in Trav4d-3
33 total Variants

1 to 10 of 22 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse

1 to 10 of 22 rows





RefSeq Transcripts NG_007044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC005402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC164155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000103592   ⟹   ENSMUSP00000100369
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1453,137,426 - 53,137,927 (+)Ensembl
GRCm38.p6 Ensembl1452,899,969 - 52,900,470 (+)Ensembl
Ensembl Protein ENSMUSP00000100369.2
  ENSMUSP00000100395.2
Ensembl Acc Id: ENSMUSP00000100369   ⟸   ENSMUST00000103592
Ig-like

Name Modeler Protein Id AA Range Protein Structure
AF-A0A075B625-F1-model_v2 AlphaFold A0A075B625 1-110 view protein structure



1 to 21 of 21 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000093939 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSG00000095572 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000103592.2 UniProtKB/TrEMBL
  ENSMUST00000103618.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
  TCR_alpha_variable UniProtKB/TrEMBL
MGD MGI:3782037 ENTREZGENE
NCBI Gene Trav4d-3 ENTREZGENE
PANTHER PTHR19339:SF9 UniProtKB/TrEMBL
  T CELL RECEPTOR ALPHA VARIABLE 39 UniProtKB/TrEMBL
Pfam V-set UniProtKB/TrEMBL
PhenoGen Trav4d-3 PhenoGen
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGv UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A075B625_MOUSE UniProtKB/TrEMBL
  Q5R1G6_MOUSE UniProtKB/TrEMBL
1 to 21 of 21 rows