Trav13n-2 (T cell receptor alpha variable 13N-2) - Rat Genome Database

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Gene: Trav13n-2 (T cell receptor alpha variable 13N-2) Mus musculus
Analyze
No known orthologs.
Symbol: Trav13n-2
Name: T cell receptor alpha variable 13N-2
RGD ID: 11322605
MGI Page MGI
Description: Orthologous to human TRAV22 (T cell receptor alpha variable 22).
Type: gene (Ensembl: TR_V_gene)
RefSeq Status: VALIDATED
Previously known as: ENSMUSG00000072525; ENSMUSG00000076811; Gm10900
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391453,491,249 - 53,491,774 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1453,491,249 - 53,491,774 (+)EnsemblGRCm39 Ensembl
GRCm381453,253,792 - 53,254,317 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1453,253,792 - 53,254,317 (+)EnsemblGRCm38mm10GRCm38
MGSCv371453,873,467 - 53,873,992 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Cytogenetic Map14C2NCBI
cM Map1427.29NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Trav13n-2Mousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Trav13n-2Mousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Trav13n-2Mousemolecular_function enablesND 2290270 MGIGO_REF:0000015

PMID:15608191  



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Variants in Trav13n-2
12 total Variants

1 to 10 of 22 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse

1 to 10 of 22 rows





RefSeq Transcripts NG_007044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC161460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000103622   ⟹   ENSMUSP00000100399
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1453,491,504 - 53,491,767 (+)Ensembl
GRCm38.p6 Ensembl1453,254,047 - 53,254,310 (+)Ensembl
Ensembl Acc Id: ENSMUST00000196941   ⟹   ENSMUSP00000143076
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1453,491,249 - 53,491,774 (+)Ensembl
GRCm38.p6 Ensembl1453,253,792 - 53,254,317 (+)Ensembl
Ensembl Protein ENSMUSP00000100373.3
  ENSMUSP00000100399.3
  ENSMUSP00000142721.2
  ENSMUSP00000143076.2
Ensembl Acc Id: ENSMUSP00000143076   ⟸   ENSMUST00000196941
Ensembl Acc Id: ENSMUSP00000100399   ⟸   ENSMUST00000103622
Ig-like

Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JF93-F1-model_v2 AlphaFold A0A0G2JF93 1-110 view protein structure



1 to 23 of 23 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000094758 UniProtKB/TrEMBL
  ENSMUSG00000094779 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000103596.3 UniProtKB/TrEMBL
  ENSMUST00000103622.3 UniProtKB/TrEMBL
  ENSMUST00000196941.2 UniProtKB/TrEMBL
  ENSMUST00000197954.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
  TCR_alpha_variable UniProtKB/TrEMBL
MGD MGI:3642345 ENTREZGENE
NCBI Gene Trav13n-2 ENTREZGENE
PANTHER T CELL RECEPTOR ALPHA VARIABLE 13-4-DV7-RELATED UniProtKB/TrEMBL
  T CELL RECEPTOR ALPHA VARIABLE 39 UniProtKB/TrEMBL
Pfam V-set UniProtKB/TrEMBL
PhenoGen Trav13n-2 PhenoGen
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGv UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A075B627_MOUSE UniProtKB/TrEMBL
  A0A0G2JF93_MOUSE UniProtKB/TrEMBL
1 to 23 of 23 rows