Trav13n-2 (T cell receptor alpha variable 13N-2) - Rat Genome Database

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Gene: Trav13n-2 (T cell receptor alpha variable 13N-2) Mus musculus
Analyze
No known orthologs.
Symbol: Trav13n-2
Name: T cell receptor alpha variable 13N-2
RGD ID: 11322605
MGI Page MGI
Description: Orthologous to human TRAV22 (T cell receptor alpha variable 22).
Type: gene (Ensembl: TR_V_gene)
RefSeq Status: VALIDATED
Previously known as: ENSMUSG00000072525; ENSMUSG00000076811; Gm10900
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391453,491,249 - 53,491,774 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1453,491,249 - 53,491,774 (+)EnsemblGRCm39 Ensembl
GRCm381453,253,792 - 53,254,317 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1453,253,792 - 53,254,317 (+)EnsemblGRCm38mm10GRCm38
MGSCv371453,873,467 - 53,873,992 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Cytogenetic Map14C2NCBI
cM Map1427.29NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:15608191  


Genomics

Variants

.
Variants in Trav13n-2
12 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
27226737Metcl12_mmetatarsal-calcaneal length 12, 10 week (mouse)143322195759437449Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
4141484Hcbip1_mhexachlorobenzene induced porphyria 1 (mouse)Not determined4733525059962593Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143743018571430320Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142999699463997133Mouse
4142310Carg1_mCandida albicans resistance gene 1 (mouse)Not determined5138245954461655Mouse
14746973Manh76_mmandible shape 76 (mouse)142228721756287217Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143033525064335381Mouse
13506929Recrq10_mrecombination rate in male meiosis QTL 10 (mouse)142792195761137449Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_007044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC161460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000103622   ⟹   ENSMUSP00000100399
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1453,491,504 - 53,491,767 (+)Ensembl
GRCm38.p6 Ensembl1453,254,047 - 53,254,310 (+)Ensembl
Ensembl Acc Id: ENSMUST00000196941   ⟹   ENSMUSP00000143076
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1453,491,249 - 53,491,774 (+)Ensembl
GRCm38.p6 Ensembl1453,253,792 - 53,254,317 (+)Ensembl
Protein Sequences
Ensembl Protein ENSMUSP00000100373.3
  ENSMUSP00000100399.3
  ENSMUSP00000142721.2
  ENSMUSP00000143076.2
Ensembl Acc Id: ENSMUSP00000143076   ⟸   ENSMUST00000196941
Ensembl Acc Id: ENSMUSP00000100399   ⟸   ENSMUST00000103622
Protein Domains
Ig-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JF93-F1-model_v2 AlphaFold A0A0G2JF93 1-110 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3642345 AgrOrtholog
Ensembl Genes ENSMUSG00000094758 UniProtKB/TrEMBL
  ENSMUSG00000094779 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000103596.3 UniProtKB/TrEMBL
  ENSMUST00000103622.3 UniProtKB/TrEMBL
  ENSMUST00000196941.2 UniProtKB/TrEMBL
  ENSMUST00000197954.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
  TCR_alpha_variable UniProtKB/TrEMBL
MGD MGI:3642345 ENTREZGENE
NCBI Gene Trav13n-2 ENTREZGENE
PANTHER T CELL RECEPTOR ALPHA VARIABLE 22 UniProtKB/TrEMBL
  T CELL RECEPTOR ALPHA VARIABLE 39 UniProtKB/TrEMBL
Pfam V-set UniProtKB/TrEMBL
PhenoGen Trav13n-2 PhenoGen
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGv UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A075B627_MOUSE UniProtKB/TrEMBL
  A0A0G2JF93_MOUSE UniProtKB/TrEMBL