Irx3os (iroquois homeobox 3, opposite strand) - Rat Genome Database

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Gene: Irx3os (iroquois homeobox 3, opposite strand) Mus musculus
Analyze
Symbol: Irx3os
Name: iroquois homeobox 3, opposite strand (Ensembl:iroquois homeobox 3, opposite strand)
RGD ID: 11083484
MGI Page MGI
Description: Is expressed in diencephalon lateral wall mantle layer; medulla oblongata basal plate mantle layer; pons mantle layer; and spinal cord mantle layer.
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Previously known as: D230002A01Rik
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39892,509,225 - 92,600,347 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl892,527,040 - 92,534,167 (+)EnsemblGRCm39 Ensembl
GRCm38891,803,336 - 91,873,722 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl891,800,415 - 91,807,539 (+)EnsemblGRCm38mm10GRCm38
MGSCv36894,689,543 - 94,696,667 (+)NCBIMGSCv36mm8
Celera896,106,799 - 96,177,527 (+)NCBICelera
Cytogenetic Map8C5NCBI
cM Map844.55NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Irx3osMousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Irx3osMousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Irx3osMousemolecular_function enablesND 2290270 MGIGO_REF:0000015

PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:21267068   PMID:24316575  



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Variants in Irx3os
8551 total Variants

Predicted Target Of
Summary Value
Count of predictions:387
Count of miRNA genes:212
Interacting mature miRNAs:232
Transcripts:ENSMUST00000062522, ENSMUST00000133337, ENSMUST00000133528
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 33 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined866326836100326976Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83663015493455280Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85892810792928107Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined876411976110412125Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined835109930115563747Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined866084397100084549Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined871032003105032123Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined876411976110412125Mouse
1301766Desp1_mdespair 1 (mouse)Not determined885486208119486373Mouse
1301253Skmw2_mskeletal muscle weight 2 (mouse)Not determined886443553120443701Mouse

1 to 10 of 33 rows






Ensembl Acc Id: ENSMUST00000062522
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl892,527,043 - 92,534,167 (+)Ensembl
GRCm38.p6 Ensembl891,800,415 - 91,807,539 (+)Ensembl
Ensembl Acc Id: ENSMUST00000133337
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl892,527,040 - 92,534,167 (+)Ensembl
GRCm38.p6 Ensembl891,800,415 - 91,807,539 (+)Ensembl
Ensembl Acc Id: ENSMUST00000133528
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl892,528,803 - 92,531,881 (+)Ensembl
GRCm38.p6 Ensembl891,802,175 - 91,805,253 (+)Ensembl
Ensembl Acc Id: ENSMUST00000243559
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl892,527,042 - 92,531,877 (+)Ensembl
Ensembl Acc Id: ENSMUST00000250126
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl892,527,073 - 92,531,605 (+)Ensembl
RefSeq Acc Id: XR_001778626
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39892,529,964 - 92,534,005 (+)NCBI
GRCm38891,803,336 - 91,807,377 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004934957
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39892,529,964 - 92,534,005 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004934958
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39892,529,964 - 92,600,347 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004934959
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39892,509,225 - 92,534,005 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004934960
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39892,509,225 - 92,534,005 (+)NCBI
Sequence:
GenBank Protein BAC39123 (Get FASTA)   NCBI Sequence Viewer  
  EDL11082 (Get FASTA)   NCBI Sequence Viewer  

RGD ID:15093482
Promoter ID:EPDNEWNC_M1397
Type:single initiation site
Name:Irx3os_1
Description:iroquois homeobox 3, opposite strand [Source:MGISymbol;Acc:MGI:2441953]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38891,800,418 - 91,800,478EPDNEWNC


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000046413 Ensembl
MGD MGI:2441953 ENTREZGENE
NCBI Gene Irx3os ENTREZGENE
PhenoGen Irx3os PhenoGen
RNAcentral URS0000A9B3C5 RNACentral
  URS00025EF3E0 RNACentral
  URS00025F0EE9 RNACentral
UniProt Q8BNB7_MOUSE UniProtKB/TrEMBL