A530020G20Rik (RIKEN cDNA A530020G20 gene) - Rat Genome Database

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Gene: A530020G20Rik (RIKEN cDNA A530020G20 gene) Mus musculus
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Symbol: A530020G20Rik
Name: RIKEN cDNA A530020G20 gene
RGD ID: 11082833
MGI Page MGI
Description: Is expressed in several structures, including adrenal gland; embryo mesenchyme; foregut; hindbrain; and vertebral axis musculature.
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: Gm38684; predicted gene, 38684
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393121,325,260 - 121,329,856 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3121,325,268 - 121,356,072 (+)EnsemblGRCm39 Ensembl
GRCm383121,532,944 - 121,536,207 (+)NCBIGRCm38GRCm38mm10GRCm38
MGSCv373121,234,537 - 121,239,126 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera3127,897,855 - 127,902,399 (+)NCBICelera
Cytogenetic Map3G1NCBI
cM Map352.94NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
A530020G20RikMousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
A530020G20RikMousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
A530020G20RikMousemolecular_function enablesND 2290270 MGIGO_REF:0000015

PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073   PMID:21267068  



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Variants in A530020G20Rik
323 total Variants

1 to 10 of 35 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300752Ap6q_malcohol preference 6 QTL (mouse)Not determined3100372912147045722Mouse
1558868Ses9_msalmonella enteritidis susceptibility 9 (mouse)Not determined3119057332153057456Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
12910796Pwbwq6_mpost-weaning body weight QTL 6 (mouse)3110084357135715812Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
12910793Pwbwq7_mpost-weaning body weight QTL 7 (mouse)3110084357135715812Mouse
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
4142449Tgq14_mtriglyceride QTL 14 (mouse)Not determined119318586153318586Mouse
10412240Alpq6_malcohol preference QTL 6 (mouse)Not determined3120772078154772078Mouse
11533920Mvb3_mmodifier of vibrator 3 (mouse)398635284132635383Mouse

1 to 10 of 35 rows






Ensembl Acc Id: ENSMUST00000180804
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3121,325,328 - 121,327,265 (+)Ensembl
Ensembl Acc Id: ENSMUST00000181070
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3121,325,268 - 121,329,855 (+)Ensembl
Ensembl Acc Id: ENSMUST00000199889
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3121,325,278 - 121,326,132 (+)Ensembl
Ensembl Acc Id: ENSMUST00000352111
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3121,325,985 - 121,356,072 (+)Ensembl
Ensembl Acc Id: ENSMUST00000352112
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3121,325,710 - 121,355,594 (+)Ensembl
Ensembl Acc Id: ENSMUST00000352113
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3121,326,025 - 121,355,583 (+)Ensembl
Ensembl Acc Id: ENSMUST00000352114
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3121,326,013 - 121,342,774 (+)Ensembl
Ensembl Acc Id: ENSMUST00000352115
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3121,326,080 - 121,339,316 (+)Ensembl
RefSeq Acc Id: NR_190113
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393121,325,260 - 121,329,856 (+)NCBI
RGD ID:6882232
Promoter ID:EPDNEW_M4567
Type:multiple initiation site
Name:AK040960_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383121,531,611 - 121,531,671EPDNEW
RGD ID:15092610
Promoter ID:EPDNEWNC_M531
Type:multiple initiation site
Name:A530020G20Rik_1
Description:RIKEN cDNA A530020G20 gene [Source:MGISymbol;Acc:MGI:2442825]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383121,531,611 - 121,531,671EPDNEWNC


1 to 9 of 9 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000097124 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000181070 ENTREZGENE
MGD MGI:2442825 ENTREZGENE
NCBI Gene A530020G20Rik ENTREZGENE
PhenoGen A530020G20Rik PhenoGen
RNAcentral URS0000811844 RNACentral
  URS0000811993 RNACentral
  URS00008119EF RNACentral
  URS0002853B68 RNACentral
1 to 9 of 9 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-01-11 A530020G20Rik  RIKEN cDNA A530020G20 gene  Gm38684  predicted gene, 38684  Data Merged 737654 PROVISIONAL