FRG2KP (FSHD region gene 2 family member K, pseudogene) - Rat Genome Database

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Gene: FRG2KP (FSHD region gene 2 family member K, pseudogene) Homo sapiens
Analyze
Symbol: FRG2KP
Name: FSHD region gene 2 family member K, pseudogene
RGD ID: 10769293
HGNC Page HGNC:51797
Description:
Type: pseudo (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Related Functional Gene: FRG2  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381631,563,222 - 31,567,715 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1631,563,082 - 31,564,783 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl1631,563,185 - 31,567,716 (-)EnsemblGRCh38hg38GRCh38
GRCh371631,574,543 - 31,579,036 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map16p11.2NCBI
HuRef1629,134,368 - 29,168,536 (-)NCBIHuRef
CHM1_11632,893,192 - 32,897,685 (-)NCBICHM1_1
T2T-CHM13v2.01631,950,616 - 31,955,109 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:356
Count of miRNA genes:305
Interacting mature miRNAs:331
Transcripts:ENST00000565692, ENST00000568403
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 300
Low 2 3 1 1 4 2 1 2 80 6 2
Below cutoff 457 475 264 78 286 38 647 328 378 79 216 338 41 189 405 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000565692
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1631,563,185 - 31,567,716 (-)Ensembl
RefSeq Acc Id: ENST00000568403
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1631,563,082 - 31,564,783 (-)Ensembl
RefSeq Acc Id: NR_135055
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381631,563,222 - 31,567,715 (-)NCBI
CHM1_11632,893,192 - 32,897,685 (-)NCBI
T2T-CHM13v2.01631,950,616 - 31,955,109 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC FRG2KP COSMIC
Ensembl Genes ENSG00000261741 Ensembl
  ENSG00000290715 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000565692 ENTREZGENE
GTEx ENSG00000261741 GTEx
  ENSG00000290715 GTEx
HGNC ID HGNC:51797 ENTREZGENE
Human Proteome Map FRG2KP Human Proteome Map
NCBI Gene FRG2KP ENTREZGENE