TUBBP8 (tubulin beta class I pseudogene 8) - Rat Genome Database

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Gene: TUBBP8 (tubulin beta class I pseudogene 8) Homo sapiens
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Symbol: TUBBP8
Name: tubulin beta class I pseudogene 8
RGD ID: 10450406
HGNC Page HGNC:42179
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: TUBB  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381529,613,279 - 29,614,470 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1529,612,570 - 29,614,274 (+)EnsemblGRCh38hg38GRCh38
GRCh371529,905,483 - 29,906,674 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map15q13.1NCBI
HuRef157,571,177 - 7,572,124 (+)NCBIHuRef
CHM1_11529,872,165 - 29,873,112 (+)NCBICHM1_1
T2T-CHM13v2.01527,403,989 - 27,405,180 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:281
Count of miRNA genes:265
Interacting mature miRNAs:279
Transcripts:ENST00000560273
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
50 160 111 148 650 183 239 55 70 45 118 421 314 3 580 77 551 182 10

Sequence


Ensembl Acc Id: ENST00000560273
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1529,612,570 - 29,614,274 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC TUBBP8 COSMIC
Ensembl Genes ENSG00000259300 Ensembl
GTEx ENSG00000259300 GTEx
HGNC ID HGNC:42179 ENTREZGENE
Human Proteome Map TUBBP8 Human Proteome Map
NCBI Gene TUBBP8 ENTREZGENE