RN7SL606P (RNA, 7SL, cytoplasmic 606, pseudogene) - Rat Genome Database

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Gene: RN7SL606P (RNA, 7SL, cytoplasmic 606, pseudogene) Homo sapiens
Analyze
Symbol: RN7SL606P
Name: RNA, 7SL, cytoplasmic 606, pseudogene
RGD ID: 10413765
HGNC Page HGNC:46622
Description:
Type: pseudo (Ensembl: misc_RNA)
RefSeq Status: INFERRED
Related Functional Gene: RN7SL1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381760,696,313 - 60,696,605 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1760,696,313 - 60,696,605 (+)EnsemblGRCh38hg38GRCh38
GRCh371758,773,674 - 58,773,966 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map17q23.2NCBI
CHM1_11758,838,410 - 58,838,702 (+)NCBICHM1_1
T2T-CHM13v2.01761,565,143 - 61,565,435 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:180
Count of miRNA genes:175
Interacting mature miRNAs:175
Transcripts:ENST00000472779
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 35 17 25 4 135 8 53 34 59 37 77 50 1 4 13 2
Below cutoff 173 186 150 52 180 35 333 125 245 49 200 199 18 65 174

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000472779
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1760,696,313 - 60,696,605 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RN7SL606P COSMIC
Ensembl Genes ENSG00000239932 Ensembl, ENTREZGENE
GTEx ENSG00000239932 GTEx
HGNC ID HGNC:46622 ENTREZGENE
Human Proteome Map RN7SL606P Human Proteome Map
NCBI Gene RN7SL606P ENTREZGENE