RNU6-1022P (RNA, U6 small nuclear 1022, pseudogene) - Rat Genome Database

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Gene: RNU6-1022P (RNA, U6 small nuclear 1022, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-1022P
Name: RNA, U6 small nuclear 1022, pseudogene
RGD ID: 10413694
HGNC Page HGNC:47985
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38121,987,816 - 21,987,919 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl121,987,816 - 21,987,919 (+)EnsemblGRCh38hg38GRCh38
GRCh37122,314,309 - 22,314,412 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map1p36.12NCBI
T2T-CHM13v2.0121,811,628 - 21,811,740 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:177
Count of miRNA genes:173
Interacting mature miRNAs:177
Transcripts:ENST00000365049
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 1 1 1
Low 16 7 6 3 5 3 7 3 4 1 10 2 8 2
Below cutoff 59 17 18 8 13 6 17 16 10 3 22 6 2 9 12

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000365049
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl121,987,816 - 21,987,919 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-1022P COSMIC
Ensembl Genes ENSG00000201919 Ensembl, ENTREZGENE
GTEx ENSG00000201919 GTEx
HGNC ID HGNC:47985 ENTREZGENE
Human Proteome Map RNU6-1022P Human Proteome Map
NCBI Gene RNU6-1022P ENTREZGENE