CYP4F26P (cytochrome P450 family 4 subfamily F member 26, pseudogene) - Rat Genome Database

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Gene: CYP4F26P (cytochrome P450 family 4 subfamily F member 26, pseudogene) Homo sapiens
Analyze
Symbol: CYP4F26P
Name: cytochrome P450 family 4 subfamily F member 26, pseudogene
RGD ID: 10413681
HGNC Page HGNC:39948
Description: INTERACTS WITH aristolochic acid A; propofol
Type: pseudo (Ensembl: lncRNA)
RefSeq Status: INFERRED
Related Functional Gene: CYP4F3  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38933,580,695 - 33,605,293 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl933,580,695 - 33,607,874 (+)EnsemblGRCh38hg38GRCh38
GRCh37933,580,693 - 33,605,291 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map9p13.3NCBI
CHM1_1933,580,454 - 33,605,038 (+)NCBICHM1_1
T2T-CHM13v2.0933,599,222 - 33,623,808 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Variants

.
Variants in CYP4F26P
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:196
Count of miRNA genes:71
Interacting mature miRNAs:71
Transcripts:ENST00000432139, ENST00000433357, ENST00000602933
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407219549GWAS868525_HChagas cardiomyopathy QTL GWAS868525 (human)3e-08Chagas cardiomyopathy93359470733594708Human
407388021GWAS1036997_Hchemokine (C-C motif) ligand 27 measurement QTL GWAS1036997 (human)0.000008chemokine (C-C motif) ligand 27 measurement93360321133603212Human


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
209 782 1414 540 4315 1074 1675 368 474 283 1668 2870 1739 33 2865 602 1327 1138 97

Sequence


Ensembl Acc Id: ENST00000432139
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl933,604,297 - 33,605,277 (+)Ensembl
Ensembl Acc Id: ENST00000433357
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl933,580,695 - 33,605,282 (+)Ensembl
Ensembl Acc Id: ENST00000602933
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl933,602,386 - 33,605,293 (+)Ensembl
Ensembl Acc Id: ENST00000657092
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl933,601,957 - 33,605,293 (+)Ensembl
Ensembl Acc Id: ENST00000658100
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl933,604,764 - 33,607,874 (+)Ensembl
Ensembl Acc Id: ENST00000659752
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl933,602,108 - 33,605,293 (+)Ensembl
Ensembl Acc Id: ENST00000664899
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl933,602,578 - 33,605,300 (+)Ensembl
Ensembl Acc Id: ENST00000669639
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl933,603,301 - 33,605,288 (+)Ensembl
Ensembl Acc Id: ENST00000671504
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl933,602,078 - 33,605,293 (+)Ensembl
Ensembl Acc Id: ENST00000703207
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl933,603,401 - 33,607,870 (+)Ensembl
Ensembl Acc Id: ENST00000844251
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl933,583,178 - 33,605,293 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC CYP4F26P COSMIC
Ensembl Genes ENSG00000226562 Ensembl, ENTREZGENE
GTEx ENSG00000226562 GTEx
HGNC ID HGNC:39948 ENTREZGENE
Human Proteome Map CYP4F26P Human Proteome Map
NCBI Gene CYP4F26P ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-15 CYP4F26P  cytochrome P450 family 4 subfamily F member 26, pseudogene    cytochrome P450, family 4, subfamily F, polypeptide 26, pseudogene  Symbol and/or name change 5135510 APPROVED