RN7SL497P (RNA, 7SL, cytoplasmic 497, pseudogene) - Rat Genome Database

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Gene: RN7SL497P (RNA, 7SL, cytoplasmic 497, pseudogene) Homo sapiens
Analyze
Symbol: RN7SL497P
Name: RNA, 7SL, cytoplasmic 497, pseudogene
RGD ID: 10413460
HGNC Page HGNC:46513
Description:
Type: pseudo (Ensembl: misc_RNA)
RefSeq Status: INFERRED
Related Functional Gene: RN7SL1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381541,191,965 - 41,192,265 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1541,191,965 - 41,192,265 (-)EnsemblGRCh38hg38GRCh38
GRCh371541,484,163 - 41,484,463 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map15q15.1NCBI
CHM1_11541,602,175 - 41,602,475 (-)NCBICHM1_1
T2T-CHM13v2.01538,998,072 - 38,998,372 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:202
Count of miRNA genes:187
Interacting mature miRNAs:193
Transcripts:ENST00000476341
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
22 60 50 29 267 37 61 1 10 74 8 60 175 150 4 230 32 412 47 3

Sequence


Ensembl Acc Id: ENST00000476341
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1541,191,965 - 41,192,265 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RN7SL497P COSMIC
Ensembl Genes ENSG00000240847 Ensembl, ENTREZGENE
GTEx ENSG00000240847 GTEx
HGNC ID HGNC:46513 ENTREZGENE
Human Proteome Map RN7SL497P Human Proteome Map
NCBI Gene RN7SL497P ENTREZGENE