RNU6-828P (RNA, U6 small nuclear 828, pseudogene) - Rat Genome Database

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Gene: RNU6-828P (RNA, U6 small nuclear 828, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-828P
Name: RNA, U6 small nuclear 828, pseudogene
RGD ID: 10413312
HGNC Page HGNC:47791
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Mouse
Rat
Dog
Alliance Orthologs
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38110,163,268 - 10,163,374 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl110,163,268 - 10,163,374 (+)EnsemblGRCh38hg38GRCh38
GRCh37110,223,326 - 10,223,432 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map1p36.22NCBI
CHM1_1110,212,715 - 10,212,821 (+)NCBICHM1_1
T2T-CHM13v2.019,706,315 - 9,706,421 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU6-828P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38110,163,268 - 10,163,374 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl110,163,268 - 10,163,374 (+)EnsemblGRCh38hg38GRCh38
GRCh37110,223,326 - 10,223,432 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map1p36.22NCBI
CHM1_1110,212,715 - 10,212,821 (+)NCBICHM1_1
T2T-CHM13v2.019,706,315 - 9,706,421 (+)NCBIT2T-CHM13v2.0
Gm23293
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391179,485,990 - 79,486,094 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1179,485,991 - 79,486,094 (+)EnsemblGRCm39 Ensembl
GRCm381179,595,164 - 79,595,268 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1179,595,165 - 79,595,268 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map11B5NCBI
LOC120099050
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8204,930,030 - 4,930,126 (-)NCBIGRCr8
mRatBN7.2204,928,145 - 4,928,241 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl204,928,145 - 4,928,241 (-)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl204,928,145 - 4,928,241 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl205,438,160 - 5,438,256 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map20p12NCBI
LOC119868605
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_TashaX52,818,754 - 52,818,858 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X63,380,609 - 63,380,713 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX63,380,609 - 63,380,713 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X61,014,765 - 61,014,869 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X62,649,761 - 62,649,865 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X62,246,703 - 62,246,807 (+)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:230
Count of miRNA genes:203
Interacting mature miRNAs:211
Transcripts:ENST00000364876
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
326 766 1039 710 1591 511 811 4 148 510 113 1032 2066 1878 47 1013 300 613 618 45

Sequence


Ensembl Acc Id: ENST00000364876
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl110,163,268 - 10,163,374 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-828P COSMIC
Ensembl Genes ENSG00000201746 Ensembl, ENTREZGENE
GTEx ENSG00000201746 GTEx
HGNC ID HGNC:47791 ENTREZGENE
Human Proteome Map RNU6-828P Human Proteome Map
NCBI Gene RNU6-828P ENTREZGENE