RNU6-1057P (RNA, U6 small nuclear 1057, pseudogene) - Rat Genome Database

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Gene: RNU6-1057P (RNA, U6 small nuclear 1057, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-1057P
Name: RNA, U6 small nuclear 1057, pseudogene
RGD ID: 10413261
HGNC Page HGNC:48020
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381720,290,257 - 20,290,358 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1720,290,257 - 20,290,358 (+)EnsemblGRCh38hg38GRCh38
GRCh371720,193,570 - 20,193,671 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map17p11.2NCBI
CHM1_11720,202,317 - 20,202,418 (+)NCBICHM1_1
T2T-CHM13v2.01720,238,922 - 20,239,023 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:258
Count of miRNA genes:248
Interacting mature miRNAs:256
Transcripts:ENST00000517162
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 22 26 21 9 49 11 72 15 53 26 71 44 2 11 23
Below cutoff 47 31 13 2 38 2 73 31 74 17 49 30 3 40 27 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000517162
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1720,290,257 - 20,290,358 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-1057P COSMIC
Ensembl Genes ENSG00000252971 Ensembl, ENTREZGENE
GTEx ENSG00000252971 GTEx
HGNC ID HGNC:48020 ENTREZGENE
Human Proteome Map RNU6-1057P Human Proteome Map
NCBI Gene RNU6-1057P ENTREZGENE