RNU7-193P (RNA, U7 small nuclear 193 pseudogene) - Rat Genome Database

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Gene: RNU7-193P (RNA, U7 small nuclear 193 pseudogene) Homo sapiens
Analyze
Symbol: RNU7-193P
Name: RNA, U7 small nuclear 193 pseudogene
RGD ID: 10413226
HGNC Page HGNC:45727
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
Related Functional Gene: RNU7-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381043,458,065 - 43,458,129 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1043,458,065 - 43,458,129 (+)EnsemblGRCh38hg38GRCh38
GRCh371043,953,513 - 43,953,577 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map10q11.21NCBI
CHM1_11043,993,229 - 43,993,293 (+)NCBICHM1_1
T2T-CHM13v2.01044,339,006 - 44,339,070 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:174
Count of miRNA genes:168
Interacting mature miRNAs:173
Transcripts:ENST00000516723
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system adipose tissue appendage entire extraembryonic component
High
Medium 1
Low 45 14 35 13 75 13 33 20 42 34 79 43 2 12 1
Below cutoff 14 10 11 4 35 5 14 13 35 11 12 14 4 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000516723
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1043,458,065 - 43,458,129 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU7-193P COSMIC
Ensembl Genes ENSG00000252532 Ensembl, ENTREZGENE
GTEx ENSG00000252532 GTEx
HGNC ID HGNC:45727 ENTREZGENE
Human Proteome Map RNU7-193P Human Proteome Map
NCBI Gene RNU7-193P ENTREZGENE