RNU6-975P (RNA, U6 small nuclear 975, pseudogene) - Rat Genome Database

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Gene: RNU6-975P (RNA, U6 small nuclear 975, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-975P
Name: RNA, U6 small nuclear 975, pseudogene
RGD ID: 10413162
HGNC Page HGNC:47938
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Mouse
Rat
Dog
Alliance Genes
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38673,464,073 - 73,464,177 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl673,464,073 - 73,464,177 (+)EnsemblGRCh38hg38GRCh38
GRCh37674,173,796 - 74,173,900 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map6q13NCBI
CHM1_1674,340,585 - 74,340,689 (+)NCBICHM1_1
T2T-CHM13v2.0674,640,468 - 74,640,572 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU6-975P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38673,464,073 - 73,464,177 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl673,464,073 - 73,464,177 (+)EnsemblGRCh38hg38GRCh38
GRCh37674,173,796 - 74,173,900 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map6q13NCBI
CHM1_1674,340,585 - 74,340,689 (+)NCBICHM1_1
T2T-CHM13v2.0674,640,468 - 74,640,572 (+)NCBIT2T-CHM13v2.0
Gm25784
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39740,529,079 - 40,529,162 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl740,529,082 - 40,529,162 (+)EnsemblGRCm39 Ensembl
GRCm38740,879,655 - 40,879,738 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl740,879,658 - 40,879,738 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map7B3NCBI
LOC120099395
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X137,625,955 - 137,626,058 (+)NCBIGRCr8
mRatBN7.2X132,706,378 - 132,706,481 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX132,706,378 - 132,706,481 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic MapXq36NCBI
LOC119873458
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha916,332,467 - 16,332,573 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0917,101,987 - 17,102,093 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl917,101,987 - 17,102,093 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1916,046,758 - 16,046,864 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0911,486,549 - 11,486,655 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0911,486,242 - 11,486,348 (+)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:161
Count of miRNA genes:158
Interacting mature miRNAs:161
Transcripts:ENST00000384296
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 4
Low 49 30 51 22 228 23 68 31 94 36 91 74 3 8 23 2
Below cutoff 78 56 38 16 59 13 74 48 89 22 43 42 4 30 35

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000384296
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl673,464,073 - 73,464,177 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-975P COSMIC
Ensembl Genes ENSG00000207023 Ensembl, ENTREZGENE
GTEx ENSG00000207023 GTEx
HGNC ID HGNC:47938 ENTREZGENE
Human Proteome Map RNU6-975P Human Proteome Map
NCBI Gene RNU6-975P ENTREZGENE