RNU6-924P (RNA, U6 small nuclear 924, pseudogene) - Rat Genome Database

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Gene: RNU6-924P (RNA, U6 small nuclear 924, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-924P
Name: RNA, U6 small nuclear 924, pseudogene
RGD ID: 10412437
HGNC Page HGNC:47887
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Rat
Dog
Alliance Genes
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381946,306,470 - 46,306,577 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1946,306,470 - 46,306,577 (-)EnsemblGRCh38hg38GRCh38
GRCh371946,809,727 - 46,809,834 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map19q13.32NCBI
CHM1_11946,811,596 - 46,811,703 (-)NCBICHM1_1
T2T-CHM13v2.01949,133,938 - 49,134,045 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU6-924P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381946,306,470 - 46,306,577 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1946,306,470 - 46,306,577 (-)EnsemblGRCh38hg38GRCh38
GRCh371946,809,727 - 46,809,834 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map19q13.32NCBI
CHM1_11946,811,596 - 46,811,703 (-)NCBICHM1_1
T2T-CHM13v2.01949,133,938 - 49,134,045 (-)NCBIT2T-CHM13v2.0
LOC120097660
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81664,905,920 - 64,906,021 (-)NCBIGRCr8
mRatBN7.21658,202,782 - 58,202,883 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1658,202,782 - 58,202,883 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1661,917,830 - 61,917,932 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map16q12.2NCBI
LOC119872390
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha657,110,513 - 57,110,616 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0654,783,282 - 54,783,385 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl654,783,282 - 54,783,385 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1654,458,076 - 54,458,179 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0654,442,759 - 54,442,862 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0654,895,434 - 54,895,537 (-)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:237
Count of miRNA genes:233
Interacting mature miRNAs:234
Transcripts:ENST00000362926
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 101 79 18 6 14 5 117 69 47 11 61 37 1 37 70
Below cutoff 194 154 24 5 24 2 188 180 145 6 51 46 3 74 109

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000362926
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1946,306,470 - 46,306,577 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-924P COSMIC
Ensembl Genes ENSG00000199796 Ensembl, ENTREZGENE
GTEx ENSG00000199796 GTEx
HGNC ID HGNC:47887 ENTREZGENE
Human Proteome Map RNU6-924P Human Proteome Map
NCBI Gene RNU6-924P ENTREZGENE