Gene: RNU6-884P (RNA, U6 small nuclear 884, pseudogene) Homo sapiens |
|
Analyze |
|
Symbol: |
RNU6-884P |
Name: |
RNA, U6 small nuclear 884, pseudogene |
RGD ID: |
10400798 |
HGNC Page |
HGNC:47847 |
Description: |
|
Type: |
pseudo (Ensembl: snRNA)
|
RefSeq Status: |
INFERRED |
RGD Orthologs |
|
Alliance Genes |
|
More Info |
more info ...
|
More Info |
|
Related Functional Gene: |
RNU6-1
|
Latest Assembly: |
GRCh38 - Human Genome Assembly GRCh38 |
Position: |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCh38 | 1 | 151,022,746 - 151,022,852 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 1 | 151,022,746 - 151,022,852 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 1 | 150,995,222 - 150,995,328 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Cytogenetic Map | 1 | q21.3 | NCBI | | | | | CHM1_1 | 1 | 152,390,532 - 152,390,638 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 1 | 150,146,438 - 150,146,544 (-) | NCBI | | T2T-CHM13v2.0 | | |
|
JBrowse: |
View Region in Genome Browser (JBrowse)
|
Model |
|
References
Genomics
Comparative Map Data
RNU6-884P (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCh38 | 1 | 151,022,746 - 151,022,852 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 1 | 151,022,746 - 151,022,852 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 1 | 150,995,222 - 150,995,328 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Cytogenetic Map | 1 | q21.3 | NCBI | | | | | CHM1_1 | 1 | 152,390,532 - 152,390,638 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 1 | 150,146,438 - 150,146,544 (-) | NCBI | | T2T-CHM13v2.0 | | |
|
Gm22226 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCm39 | 7 | 96,569,201 - 96,569,309 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 7 | 96,569,201 - 96,569,309 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 7 | 96,919,994 - 96,920,102 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 7 | 96,919,994 - 96,920,102 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | Cytogenetic Map | 7 | E1 | NCBI | | | | |
|
Rnu6-884 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCr8 | 1 | 4,876,581 - 4,876,685 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 1 | 3,056,287 - 3,056,391 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 1 | 3,056,287 - 3,056,391 (+) | Ensembl | | mRatBN7.2 Ensembl | | | Rnor_6.0 Ensembl | 1 | 2,720,299 - 2,720,403 (+) | NCBI | Rnor6.0 | | rn6 | Rnor6.0 | Cytogenetic Map | 1 | p13 | NCBI | | | | |
|
LOC119867872 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
Dog10K_Boxer_Tasha | 36 | 15,438,087 - 15,438,192 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 36 | 15,550,422 - 15,550,527 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 36 | 15,550,422 - 15,550,527 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 36 | 15,639,353 - 15,639,458 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 36 | 15,626,681 - 15,626,786 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 36 | 15,738,949 - 15,739,054 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
|
miRNA Target Status
Predicted Target Of
Count of predictions: | 204 | Count of miRNA genes: | 191 | Interacting mature miRNAs: | 200 | Transcripts: | ENST00000363889 | Prediction methods: | Miranda, Rnahybrid, Targetscan | Result types: | miRGate_prediction | |
Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM
Below Cutoff: < 0.5 TPM
|
alimentary part of gastrointestinal system |
circulatory system |
endocrine system |
exocrine system |
hemolymphoid system |
hepatobiliary system |
integumental system |
musculoskeletal system |
nervous system |
renal system |
reproductive system |
respiratory system |
sensory system |
adipose tissue |
appendage |
entire extraembryonic component |
High |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Medium |
|
|
|
|
1
|
|
|
|
|
|
|
|
|
|
|
|
Low |
80
|
48
|
198
|
58
|
140
|
55
|
126
|
26
|
102
|
58
|
122
|
226
|
3
|
15
|
51
|
|
Below cutoff |
206
|
182
|
184
|
41
|
95
|
18
|
218
|
157
|
222
|
37
|
112
|
153
|
24
|
74
|
134
|
1
|
Sequence
RefSeq Acc Id: |
ENST00000363889 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
---|
GRCh38.p14 Ensembl | 1 | 151,022,746 - 151,022,852 (-) | Ensembl |
|
Additional Information
|
|