RNU6-901P (RNA, U6 small nuclear 901, pseudogene) - Rat Genome Database

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Gene: RNU6-901P (RNA, U6 small nuclear 901, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-901P
Name: RNA, U6 small nuclear 901, pseudogene
RGD ID: 10400589
HGNC Page HGNC:47864
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Mouse
Rat
Alliance Genes
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383153,471,466 - 153,471,571 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3153,471,466 - 153,471,571 (-)EnsemblGRCh38hg38GRCh38
GRCh373153,189,255 - 153,189,360 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map3q25.2NCBI
CHM1_13153,152,982 - 153,153,087 (-)NCBICHM1_1
T2T-CHM13v2.03156,242,126 - 156,242,231 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU6-901P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383153,471,466 - 153,471,571 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3153,471,466 - 153,471,571 (-)EnsemblGRCh38hg38GRCh38
GRCh373153,189,255 - 153,189,360 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map3q25.2NCBI
CHM1_13153,152,982 - 153,153,087 (-)NCBICHM1_1
T2T-CHM13v2.03156,242,126 - 156,242,231 (-)NCBIT2T-CHM13v2.0
Gm25412
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X60,982,497 - 60,982,603 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX60,982,497 - 60,982,603 (+)EnsemblGRCm39 Ensembl
GRCm38X61,938,891 - 61,938,997 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX61,938,891 - 61,938,997 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic MapXA6NCBI
LOC120102571
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8423,923,306 - 23,923,413 (-)NCBIGRCr8
mRatBN7.2422,968,285 - 22,968,392 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl422,968,285 - 22,968,392 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl419,875,361 - 19,875,468 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map4q12NCBI

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:85
Count of miRNA genes:79
Interacting mature miRNAs:80
Transcripts:ENST00000384593
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 1 20 2 2 4 4 4 1
Below cutoff 4 2 1 8 13 6 4 4 6 10 1 9 4

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000384593
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3153,471,466 - 153,471,571 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-901P COSMIC
Ensembl Genes ENSG00000207323 Ensembl, ENTREZGENE
GTEx ENSG00000207323 GTEx
HGNC ID HGNC:47864 ENTREZGENE
Human Proteome Map RNU6-901P Human Proteome Map
NCBI Gene RNU6-901P ENTREZGENE