RNU6-449P (RNA, U6 small nuclear 449, pseudogene) - Rat Genome Database

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Gene: RNU6-449P (RNA, U6 small nuclear 449, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-449P
Name: RNA, U6 small nuclear 449, pseudogene
RGD ID: 10400532
HGNC Page HGNC:47412
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Mouse
Rat
Alliance Orthologs
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381553,764,204 - 53,764,310 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1553,764,204 - 53,764,310 (+)EnsemblGRCh38hg38GRCh38
GRCh371554,056,401 - 54,056,507 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map15q21.3NCBI
CHM1_11554,175,271 - 54,175,377 (+)NCBICHM1_1
T2T-CHM13v2.01551,573,713 - 51,573,819 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU6-449P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381553,764,204 - 53,764,310 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1553,764,204 - 53,764,310 (+)EnsemblGRCh38hg38GRCh38
GRCh371554,056,401 - 54,056,507 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map15q21.3NCBI
CHM1_11554,175,271 - 54,175,377 (+)NCBICHM1_1
T2T-CHM13v2.01551,573,713 - 51,573,819 (+)NCBIT2T-CHM13v2.0
Gm24003
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39533,070,975 - 33,071,074 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl533,070,975 - 33,071,074 (+)EnsemblGRCm39 Ensembl
GRCm38532,913,631 - 32,913,730 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl532,913,631 - 32,913,730 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map5B1NCBI
LOC120096762
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81482,038,123 - 82,038,225 (-)NCBIGRCr8
mRatBN7.21477,813,646 - 77,813,748 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1477,813,646 - 77,813,748 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1483,170,344 - 83,170,446 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map14q21NCBI

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:18
Count of miRNA genes:15
Interacting mature miRNAs:15
Transcripts:ENST00000383914
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human


Expression

RNA-SEQ Expression

adipose tissue
ectoderm
endocrine system
endoderm
hemolymphoid system
integumental system
mesenchyme
mesoderm
reproductive system
respiratory system
2 1 1 1 1 1 2 4 6 1

Sequence


Ensembl Acc Id: ENST00000383914
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1553,764,204 - 53,764,310 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-449P COSMIC
Ensembl Genes ENSG00000206641 Ensembl, ENTREZGENE
GTEx ENSG00000206641 GTEx
HGNC ID HGNC:47412 ENTREZGENE
Human Proteome Map RNU6-449P Human Proteome Map
NCBI Gene RNU6-449P ENTREZGENE