RNU6-1290P (RNA, U6 small nuclear 1290, pseudogene) - Rat Genome Database

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Gene: RNU6-1290P (RNA, U6 small nuclear 1290, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-1290P
Name: RNA, U6 small nuclear 1290, pseudogene
RGD ID: 10400507
HGNC Page HGNC:48253
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Dog
Alliance Genes
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382175,029,769 - 175,029,877 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2175,029,769 - 175,029,877 (+)EnsemblGRCh38hg38GRCh38
GRCh372175,894,497 - 175,894,605 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map2q31.1NCBI
CHM1_12175,900,487 - 175,900,595 (+)NCBICHM1_1
T2T-CHM13v2.02175,518,526 - 175,518,634 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU6-1290P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382175,029,769 - 175,029,877 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2175,029,769 - 175,029,877 (+)EnsemblGRCh38hg38GRCh38
GRCh372175,894,497 - 175,894,605 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map2q31.1NCBI
CHM1_12175,900,487 - 175,900,595 (+)NCBICHM1_1
T2T-CHM13v2.02175,518,526 - 175,518,634 (+)NCBIT2T-CHM13v2.0
LOC119867710
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha146,372,279 - 6,372,381 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0146,446,656 - 6,446,758 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl146,446,656 - 6,446,758 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1146,652,099 - 6,652,201 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0146,396,782 - 6,396,884 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0146,540,424 - 6,540,526 (-)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:169
Count of miRNA genes:153
Interacting mature miRNAs:156
Transcripts:ENST00000362957
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 3 4 7 7 27 6 13 3 7 5 12 12 2 4 5
Below cutoff 12 4 10 8 8 4 11 4 12 1 17 7 4 9 6

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000362957
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2175,029,769 - 175,029,877 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-1290P COSMIC
Ensembl Genes ENSG00000199827 Ensembl, ENTREZGENE
GTEx ENSG00000199827 GTEx
HGNC ID HGNC:48253 ENTREZGENE
Human Proteome Map RNU6-1290P Human Proteome Map
NCBI Gene RNU6-1290P ENTREZGENE