RNU6-1245P (RNA, U6 small nuclear 1245, pseudogene) - Rat Genome Database

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Gene: RNU6-1245P (RNA, U6 small nuclear 1245, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-1245P
Name: RNA, U6 small nuclear 1245, pseudogene
RGD ID: 10400506
HGNC Page HGNC:48208
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Mouse
Rat
Dog
Alliance Genes
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38127,824,538 - 27,824,643 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl127,824,538 - 27,824,643 (+)EnsemblGRCh38hg38GRCh38
GRCh37128,151,049 - 28,151,154 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map1p35.3NCBI
CHM1_1128,266,238 - 28,266,343 (+)NCBICHM1_1
T2T-CHM13v2.0127,665,833 - 27,665,938 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU6-1245P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38127,824,538 - 27,824,643 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl127,824,538 - 27,824,643 (+)EnsemblGRCh38hg38GRCh38
GRCh37128,151,049 - 28,151,154 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map1p35.3NCBI
CHM1_1128,266,238 - 28,266,343 (+)NCBICHM1_1
T2T-CHM13v2.0127,665,833 - 27,665,938 (+)NCBIT2T-CHM13v2.0
Gm22699
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391449,006,811 - 49,006,915 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1449,006,811 - 49,006,915 (-)EnsemblGRCm39 Ensembl
GRCm381448,769,354 - 48,769,458 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1448,769,354 - 48,769,458 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map14C1NCBI
LOC120097200
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81524,540,080 - 24,540,191 (-)NCBIGRCr8
mRatBN7.21522,060,418 - 22,060,529 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1522,060,418 - 22,060,529 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1525,633,752 - 25,633,850 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map15p14NCBI
LOC119867262
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha3237,922,754 - 37,922,855 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0323,981,173 - 3,981,274 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl323,981,173 - 3,981,274 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1324,022,025 - 4,022,126 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0323,919,193 - 3,919,294 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03236,046,515 - 36,046,616 (+)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:220
Count of miRNA genes:217
Interacting mature miRNAs:219
Transcripts:ENST00000411130
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 38 37 48 7 73 7 55 18 103 15 40 69 8 27
Below cutoff 128 94 57 5 99 2 114 75 238 13 69 91 3 45 62

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000411130
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl127,824,538 - 27,824,643 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-1245P COSMIC
Ensembl Genes ENSG00000223062 Ensembl, ENTREZGENE
GTEx ENSG00000223062 GTEx
HGNC ID HGNC:48208 ENTREZGENE
Human Proteome Map RNU6-1245P Human Proteome Map
NCBI Gene RNU6-1245P ENTREZGENE