Gene: RNU6-492P (RNA, U6 small nuclear 492, pseudogene) Homo sapiens |
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Analyze |
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Symbol: |
RNU6-492P |
Name: |
RNA, U6 small nuclear 492, pseudogene |
RGD ID: |
10400482 |
HGNC Page |
HGNC:47455 |
Description: |
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Type: |
pseudo (Ensembl: snRNA)
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RefSeq Status: |
INFERRED |
RGD Orthologs |
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Alliance Orthologs |
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More Info |
more info ...
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More Info |
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Related Functional Gene: |
RNU6-1
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Latest Assembly: |
GRCh38 - Human Genome Assembly GRCh38 |
Position: |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 9 | 107,475,037 - 107,475,138 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 9 | 107,475,036 - 107,475,139 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 9 | 110,237,318 - 110,237,419 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Cytogenetic Map | 9 | q31.2 | NCBI | | | | | CHM1_1 | 9 | 110,384,010 - 110,384,111 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 9 | 119,646,809 - 119,646,910 (-) | NCBI | | T2T-CHM13v2.0 | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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References
Genomics
Comparative Map Data
RNU6-492P (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 9 | 107,475,037 - 107,475,138 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 9 | 107,475,036 - 107,475,139 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 9 | 110,237,318 - 110,237,419 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Cytogenetic Map | 9 | q31.2 | NCBI | | | | | CHM1_1 | 9 | 110,384,010 - 110,384,111 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 9 | 119,646,809 - 119,646,910 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Gm23730 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 9 | 70,428,880 - 70,428,986 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 9 | 70,428,880 - 70,428,986 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 9 | 70,521,598 - 70,521,704 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 9 | 70,521,598 - 70,521,704 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | Cytogenetic Map | 9 | D | NCBI | | | | |
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Rnu6-492 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 2 | 169,571,456 - 169,571,562 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 2 | 167,273,381 - 167,273,487 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 2 | 167,273,381 - 167,273,487 (+) | Ensembl | | mRatBN7.2 Ensembl | | | Cytogenetic Map | 2 | q34 | NCBI | | | | |
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LOC119874107 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ROS_Cfam_1.0 | 11 | 52,510,769 - 52,510,875 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 11 | 52,510,769 - 52,510,875 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 11 | 51,055,366 - 51,055,472 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 11 | 51,014,347 - 51,014,453 (-) | NCBI | | UNSW_CanFamBas_1.0 | | |
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miRNA Target Status
Predicted Target Of
Count of predictions: | 33 | Count of miRNA genes: | 33 | Interacting mature miRNAs: | 33 | Transcripts: | ENST00000363035 | Prediction methods: | Miranda, Rnahybrid | Result types: | miRGate_prediction | |
Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM
Below Cutoff: < 0.5 TPM
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alimentary part of gastrointestinal system |
circulatory system |
endocrine system |
exocrine system |
hemolymphoid system |
integumental system |
musculoskeletal system |
nervous system |
renal system |
reproductive system |
respiratory system |
sensory system |
adipose tissue |
appendage |
entire extraembryonic component |
High |
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Medium |
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Low |
4
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1
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1
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1
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2
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4
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2
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4
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1
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6
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6
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1
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3
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Below cutoff |
7
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6
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3
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2
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16
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5
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10
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3
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9
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7
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5
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7
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1
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Sequence
RefSeq Acc Id: |
ENST00000363035 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
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GRCh38.p14 Ensembl | 9 | 107,475,036 - 107,475,139 (-) | Ensembl |
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Additional Information
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