RNU6-783P (RNA, U6 small nuclear 783, pseudogene) - Rat Genome Database

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Gene: RNU6-783P (RNA, U6 small nuclear 783, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-783P
Name: RNA, U6 small nuclear 783, pseudogene
RGD ID: 10400346
HGNC Page HGNC:47746
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Mouse
Rat
Alliance Genes
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381123,849,778 - 23,849,882 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1123,849,778 - 23,849,882 (+)EnsemblGRCh38hg38GRCh38
GRCh371123,871,324 - 23,871,428 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map11p14.3NCBI
CHM1_11123,870,804 - 23,870,908 (+)NCBICHM1_1
T2T-CHM13v2.01123,973,913 - 23,974,017 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU6-783P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381123,849,778 - 23,849,882 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1123,849,778 - 23,849,882 (+)EnsemblGRCh38hg38GRCh38
GRCh371123,871,324 - 23,871,428 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map11p14.3NCBI
CHM1_11123,870,804 - 23,870,908 (+)NCBICHM1_1
T2T-CHM13v2.01123,973,913 - 23,974,017 (+)NCBIT2T-CHM13v2.0
Gm25652
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39155,064,842 - 5,064,944 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl155,064,842 - 5,064,944 (+)EnsemblGRCm39 Ensembl
GRCm38155,035,360 - 5,035,462 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl155,035,360 - 5,035,462 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map15A1NCBI
Rnu6-783
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8136,632,651 - 36,632,757 (+)NCBIGRCr8
mRatBN7.2134,804,258 - 34,804,364 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl134,804,258 - 34,804,364 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map1p11NCBI

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:233
Count of miRNA genes:226
Interacting mature miRNAs:231
Transcripts:ENST00000516710
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 3 4 2 2 18 2 3 5 16 4 2
Below cutoff 3 3 7 3 1 1 1 2 4 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000516710
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1123,849,778 - 23,849,882 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-783P COSMIC
Ensembl Genes ENSG00000252519 Ensembl, ENTREZGENE
GTEx ENSG00000252519 GTEx
HGNC ID HGNC:47746 ENTREZGENE
Human Proteome Map RNU6-783P Human Proteome Map
NCBI Gene RNU6-783P ENTREZGENE