RNU6-54P (RNA, U6 small nuclear 54, pseudogene) - Rat Genome Database

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Gene: RNU6-54P (RNA, U6 small nuclear 54, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-54P
Name: RNA, U6 small nuclear 54, pseudogene
RGD ID: 10400330
HGNC Page HGNC:42544
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
Previously known as: RNU6-54
RGD Orthologs
Dog
Alliance Genes
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381370,459,466 - 70,459,545 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1370,459,464 - 70,459,570 (+)EnsemblGRCh38hg38GRCh38
GRCh371371,033,598 - 71,033,677 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map13q21.33NCBI
CHM1_11371,001,143 - 71,001,222 (+)NCBICHM1_1
T2T-CHM13v2.01369,683,817 - 69,683,896 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU6-54P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381370,459,466 - 70,459,545 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1370,459,464 - 70,459,570 (+)EnsemblGRCh38hg38GRCh38
GRCh371371,033,598 - 71,033,677 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map13q21.33NCBI
CHM1_11371,001,143 - 71,001,222 (+)NCBICHM1_1
T2T-CHM13v2.01369,683,817 - 69,683,896 (+)NCBIT2T-CHM13v2.0
LOC119865081
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha2149,209,812 - 49,209,919 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02150,941,230 - 50,941,337 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2150,941,230 - 50,941,337 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12149,914,680 - 49,914,787 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02150,086,782 - 50,086,889 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02150,708,561 - 50,708,669 (-)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:90
Count of miRNA genes:88
Interacting mature miRNAs:89
Transcripts:ENST00000365563
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system entire extraembryonic component
High
Medium
Low 3 3 5 3 1 1 5 3
Below cutoff 3 1 2 1 2 3 1 2 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000365563
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1370,459,464 - 70,459,570 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-54P COSMIC
Ensembl Genes ENSG00000202433 Ensembl
GTEx ENSG00000202433 GTEx
HGNC ID HGNC:42544 ENTREZGENE
Human Proteome Map RNU6-54P Human Proteome Map
NCBI Gene RNU6-54P ENTREZGENE