RNU6-1304P (RNA, U6 small nuclear 1304, pseudogene) - Rat Genome Database

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Gene: RNU6-1304P (RNA, U6 small nuclear 1304, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-1304P
Name: RNA, U6 small nuclear 1304, pseudogene
RGD ID: 10400305
HGNC Page HGNC:48267
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Rat
Dog
Alliance Genes
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381225,741,275 - 225,741,380 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1225,741,275 - 225,741,380 (+)EnsemblGRCh38hg38GRCh38
GRCh371225,928,977 - 225,929,082 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map1q42.12NCBI
T2T-CHM13v2.01224,929,288 - 224,929,393 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU6-1304P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381225,741,275 - 225,741,380 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1225,741,275 - 225,741,380 (+)EnsemblGRCh38hg38GRCh38
GRCh371225,928,977 - 225,929,082 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map1q42.12NCBI
T2T-CHM13v2.01224,929,288 - 224,929,393 (+)NCBIT2T-CHM13v2.0
LOC120094403
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88122,878,026 - 122,878,125 (+)NCBIGRCr8
mRatBN7.28113,999,835 - 113,999,934 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8113,999,835 - 113,999,934 (+)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl8113,999,835 - 113,999,934 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl8122,333,945 - 122,334,044 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map8q32NCBI
LOC119873825
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha107,910,045 - 7,910,150 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0108,086,182 - 8,086,287 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl108,086,182 - 8,086,287 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1107,962,803 - 7,962,908 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0108,203,325 - 8,203,430 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0108,334,169 - 8,334,274 (-)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:251
Count of miRNA genes:242
Interacting mature miRNAs:249
Transcripts:ENST00000411374
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 6 94 20 9 8 8 117 91 36 11 44 28 2 1 107
Below cutoff 24 97 9 15 6 3 259 195 27 15 27 19 13 10 237

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000411374
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1225,741,275 - 225,741,380 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-1304P COSMIC
Ensembl Genes ENSG00000223306 Ensembl, ENTREZGENE
GTEx ENSG00000223306 GTEx
HGNC ID HGNC:48267 ENTREZGENE
Human Proteome Map RNU6-1304P Human Proteome Map
NCBI Gene RNU6-1304P ENTREZGENE