Gene: RNU6-383P (RNA, U6 small nuclear 383, pseudogene) Homo sapiens |
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Analyze |
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Symbol: |
RNU6-383P |
Name: |
RNA, U6 small nuclear 383, pseudogene |
RGD ID: |
10400043 |
HGNC Page |
HGNC:47346 |
Description: |
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Type: |
pseudo (Ensembl: snRNA)
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RefSeq Status: |
INFERRED |
RGD Orthologs |
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Alliance Genes |
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More Info |
more info ...
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More Info |
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Related Functional Gene: |
RNU6-1
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Latest Assembly: |
GRCh38 - Human Genome Assembly GRCh38 |
Position: |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | X | 150,955,552 - 150,955,645 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | X | 150,955,494 - 150,955,587 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | X | 150,124,025 - 150,124,118 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Cytogenetic Map | X | q28 | NCBI | | | | | CHM1_1 | X | 149,998,416 - 149,998,509 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | X | 149,223,101 - 149,223,194 (-) | NCBI | | T2T-CHM13v2.0 | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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References
Genomics
Comparative Map Data
RNU6-383P (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | X | 150,955,552 - 150,955,645 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | X | 150,955,494 - 150,955,587 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | X | 150,124,025 - 150,124,118 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Cytogenetic Map | X | q28 | NCBI | | | | | CHM1_1 | X | 149,998,416 - 149,998,509 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | X | 149,223,101 - 149,223,194 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Gm24002 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 4 | 148,623,584 - 148,623,687 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 4 | 148,623,584 - 148,623,687 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 4 | 148,539,127 - 148,539,230 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 4 | 148,539,127 - 148,539,230 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | Cytogenetic Map | 4 | E2 | NCBI | | | | |
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Rnu6-383 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 3 | 94,960,600 - 94,960,704 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 3 | 74,504,399 - 74,504,503 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 3 | 74,504,399 - 74,504,503 (-) | Ensembl | | mRatBN7.2 Ensembl | | | Rnor_6.0 Ensembl | 3 | 77,198,560 - 77,198,664 (-) | NCBI | Rnor6.0 | | rn6 | Rnor6.0 | Cytogenetic Map | 3 | q24 | NCBI | | | | |
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LOC119868638 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ROS_Cfam_1.0 | X | 36,993,739 - 36,993,841 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | X | 36,993,739 - 36,993,841 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | X | 37,035,545 - 37,035,647 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | X | 37,019,955 - 37,020,057 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | X | 37,051,808 - 37,051,910 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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miRNA Target Status
Predicted Target Of
Count of predictions: | 89 | Count of miRNA genes: | 88 | Interacting mature miRNAs: | 89 | Transcripts: | ENST00000410864 | Prediction methods: | Microtar, Miranda, Rnahybrid | Result types: | miRGate_prediction | |
Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM
Below Cutoff: < 0.5 TPM
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alimentary part of gastrointestinal system |
circulatory system |
endocrine system |
exocrine system |
hemolymphoid system |
hepatobiliary system |
integumental system |
musculoskeletal system |
nervous system |
renal system |
reproductive system |
respiratory system |
appendage |
High |
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Medium |
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Low |
9
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57
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55
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7
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55
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2
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2
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5
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6
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Below cutoff |
22
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1
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55
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52
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15
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52
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4
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5
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7
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5
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2
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6
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2
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Sequence
RefSeq Acc Id: |
ENST00000410864 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
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GRCh38.p14 Ensembl | X | 150,955,494 - 150,955,587 (-) | Ensembl |
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Additional Information
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