RNU6-1213P (RNA, U6 small nuclear 1213, pseudogene) - Rat Genome Database

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Gene: RNU6-1213P (RNA, U6 small nuclear 1213, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-1213P
Name: RNA, U6 small nuclear 1213, pseudogene
RGD ID: 10400025
HGNC Page HGNC:48176
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Dog
Alliance Orthologs
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38880,405,516 - 80,405,609 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl880,405,516 - 80,405,609 (+)EnsemblGRCh38hg38GRCh38
GRCh37881,317,751 - 81,317,844 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map8q21.13NCBI
CHM1_1881,369,740 - 81,369,833 (+)NCBICHM1_1
T2T-CHM13v2.0880,837,071 - 80,837,164 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU6-1213P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38880,405,516 - 80,405,609 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl880,405,516 - 80,405,609 (+)EnsemblGRCh38hg38GRCh38
GRCh37881,317,751 - 81,317,844 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map8q21.13NCBI
CHM1_1881,369,740 - 81,369,833 (+)NCBICHM1_1
T2T-CHM13v2.0880,837,071 - 80,837,164 (+)NCBIT2T-CHM13v2.0
LOC119864534
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1931,914,671 - 31,914,777 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01933,044,585 - 33,044,691 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1933,044,585 - 33,044,691 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11931,718,781 - 31,718,887 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01931,887,226 - 31,887,332 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01933,074,604 - 33,074,710 (-)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:220
Count of miRNA genes:210
Interacting mature miRNAs:219
Transcripts:ENST00000517075
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system adipose tissue appendage
High
Medium
Low 3 1 1 4 1 4 7
Below cutoff 1 1 1 1 1 2 3 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000517075
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl880,405,516 - 80,405,609 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-1213P COSMIC
Ensembl Genes ENSG00000252884 Ensembl, ENTREZGENE
GTEx ENSG00000252884 GTEx
HGNC ID HGNC:48176 ENTREZGENE
Human Proteome Map RNU6-1213P Human Proteome Map
NCBI Gene RNU6-1213P ENTREZGENE