RNU6-504P (RNA, U6 small nuclear 504, pseudogene) - Rat Genome Database

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Gene: RNU6-504P (RNA, U6 small nuclear 504, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-504P
Name: RNA, U6 small nuclear 504, pseudogene
RGD ID: 10400022
HGNC Page HGNC:47467
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Dog
Alliance Genes
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X51,870,706 - 51,870,809 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX51,870,706 - 51,870,809 (-)EnsemblGRCh38hg38GRCh38
GRCh37X51,613,802 - 51,613,905 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic MapXp11.22NCBI
CHM1_1X51,687,716 - 51,687,819 (-)NCBICHM1_1
T2T-CHM13v2.0X51,142,398 - 51,142,501 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU6-504P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X51,870,706 - 51,870,809 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX51,870,706 - 51,870,809 (-)EnsemblGRCh38hg38GRCh38
GRCh37X51,613,802 - 51,613,905 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic MapXp11.22NCBI
CHM1_1X51,687,716 - 51,687,819 (-)NCBICHM1_1
T2T-CHM13v2.0X51,142,398 - 51,142,501 (-)NCBIT2T-CHM13v2.0
LOC119864337
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha186,055,054 - 6,055,159 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0186,251,925 - 6,252,030 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl186,251,925 - 6,252,030 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1186,241,763 - 6,241,868 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0186,215,923 - 6,216,028 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0186,322,123 - 6,322,228 (+)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:99
Count of miRNA genes:95
Interacting mature miRNAs:98
Transcripts:ENST00000516568
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 1
Low 55 22 53 29 133 27 73 11 53 32 56 68 3 4 23
Below cutoff 99 50 71 20 32 5 66 46 86 24 56 54 15 14 43

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000516568
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX51,870,706 - 51,870,809 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-504P COSMIC
Ensembl Genes ENSG00000252377 Ensembl, ENTREZGENE
GTEx ENSG00000252377 GTEx
HGNC ID HGNC:47467 ENTREZGENE
Human Proteome Map RNU6-504P Human Proteome Map
NCBI Gene RNU6-504P ENTREZGENE