RNU6-1014P (RNA, U6 small nuclear 1014, pseudogene) - Rat Genome Database

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Gene: RNU6-1014P (RNA, U6 small nuclear 1014, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-1014P
Name: RNA, U6 small nuclear 1014, pseudogene
RGD ID: 10400000
HGNC Page HGNC:47977
Description: INTERACTS WITH benzethonium chloride; dimethyl-(phenylmethyl)-[2-[2-[4-(2,4,4-trimethylpentan-2-yl)phenoxy]ethoxy]ethyl]ammonium; sodium hypochlorite
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Rat
Alliance Orthologs
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381546,660,658 - 46,660,760 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1546,660,658 - 46,660,760 (+)EnsemblGRCh38hg38GRCh38
GRCh371546,952,856 - 46,952,958 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map15q21.1NCBI
CHM1_11547,070,773 - 47,070,875 (+)NCBICHM1_1
T2T-CHM13v2.01544,468,524 - 44,468,626 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
RNU6-1014P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381546,660,658 - 46,660,760 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1546,660,658 - 46,660,760 (+)EnsemblGRCh38hg38GRCh38
GRCh371546,952,856 - 46,952,958 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map15q21.1NCBI
CHM1_11547,070,773 - 47,070,875 (+)NCBICHM1_1
T2T-CHM13v2.01544,468,524 - 44,468,626 (+)NCBIT2T-CHM13v2.0
LOC120102574
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84104,293,987 - 104,294,091 (+)NCBIGRCr8
mRatBN7.24102,735,624 - 102,735,728 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4102,735,624 - 102,735,728 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map4q32NCBI

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:36
Count of miRNA genes:33
Interacting mature miRNAs:33
Transcripts:ENST00000383940
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
1 2 4 8 33 2 9 6 2 17 15 3 31 2 4 9

Sequence


Ensembl Acc Id: ENST00000383940
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1546,660,658 - 46,660,760 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-1014P COSMIC
Ensembl Genes ENSG00000238456 Ensembl, ENTREZGENE
GTEx ENSG00000238456 GTEx
HGNC ID HGNC:47977 ENTREZGENE
Human Proteome Map RNU6-1014P Human Proteome Map
NCBI Gene RNU6-1014P ENTREZGENE