RNU7-167P (RNA, U7 small nuclear 167 pseudogene) - Rat Genome Database

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Pathways
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Gene: RNU7-167P (RNA, U7 small nuclear 167 pseudogene) Homo sapiens
Analyze
Symbol: RNU7-167P
Name: RNA, U7 small nuclear 167 pseudogene
RGD ID: 10399866
HGNC Page HGNC:45701
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
Related Functional Gene: RNU7-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382235,249,772 - 35,249,833 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2235,249,772 - 35,249,833 (+)EnsemblGRCh38hg38GRCh38
GRCh372235,645,765 - 35,645,826 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map22q12.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:260
Count of miRNA genes:239
Interacting mature miRNAs:259
Transcripts:ENST00000459160
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system adipose tissue appendage
High
Medium
Low 9 6 5 4 21 4 31 5 10 5 24 16 1 4
Below cutoff 2 1 4 5 1 1 4

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_044809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL008635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000459160
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2235,249,772 - 35,249,833 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU7-167P COSMIC
Ensembl Genes ENSG00000238584 Ensembl, ENTREZGENE
GTEx ENSG00000238584 GTEx
HGNC ID HGNC:45701 ENTREZGENE
Human Proteome Map RNU7-167P Human Proteome Map
NCBI Gene RNU7-167P ENTREZGENE