RNU1-42P (RNA, U1 small nuclear 42, pseudogene) - Rat Genome Database

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Gene: RNU1-42P (RNA, U1 small nuclear 42, pseudogene) Homo sapiens
Analyze
Symbol: RNU1-42P
Name: RNA, U1 small nuclear 42, pseudogene
RGD ID: 10399734
HGNC Page HGNC:48384
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
Related Functional Gene: RNU1-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381748,949,367 - 48,949,520 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1748,949,361 - 48,949,520 (-)EnsemblGRCh38hg38GRCh38
GRCh371747,026,729 - 47,026,882 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map17q21.32NCBI
CHM1_11747,092,467 - 47,092,620 (-)NCBICHM1_1
T2T-CHM13v2.01749,813,081 - 49,813,234 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:245
Count of miRNA genes:240
Interacting mature miRNAs:245
Transcripts:ENST00000364033
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 1 1 1
Low 13 8 6 3 17 1 5 3 29 6 29 7 4 1 1 1 2
Below cutoff 48 36 25 5 27 6 79 47 53 6 103 21 23 55 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000364033
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1748,949,361 - 48,949,520 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU1-42P COSMIC
Ensembl Genes ENSG00000200903 Ensembl, ENTREZGENE
GTEx ENSG00000200903 GTEx
HGNC ID HGNC:48384 ENTREZGENE
Human Proteome Map RNU1-42P Human Proteome Map
NCBI Gene RNU1-42P ENTREZGENE